RetrogeneDB ID: retro_ogar_2762

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873661.1:3335036..3335528(-)
• Located in intron of: ENSOGAG00000003763

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HEBP2
• Ensembl ID: ENSOGAG00000005010
• Aliases: None
• Description: heme binding protein 2 [Source:HGNC Symbol;Acc:15716]

Sequence

>retro_ogar_2762
GTACTCCAGCCAGATCCCAGGGTGGCTGAGAGTGCAGTGGCCCAAGCAGTGGAGACACTGGGCTGCAAGGCCTAGGAGGA
TGAGGGCCAGCCCCAAAGTTGTGAGATCCAACACTGTGGACCGGCCAAGTAGGTCAGCACTTCCGTTGAGACTATGGAGT
AGGATTTAGCCATCCAAACTGACTTTTCAAAACTGAACATCTATATCCATTGCAAAAATGAGAAAGAGATGAAAATAAAG
ATGATAGCTCCAGTAACAAGCTATTGGGAACTGGGTTCAGGTCCTTTTAGTGAGCCTACCATTACCATTTTCCTGTGTAT
CCTCTCTGATCAGCAGTTTGATTTGCCCAGGCCTTCAGGGTCAGATGTCTTCCTTTGAGGACACAGCTGAAATAACTGTG
TTTGCATGGTCTTTCAATGGATTCTCTAATGTTGAAAGAATCAAGAACAACTTTTGACATTAGCAAACATTTTGAGGGAA
GAAGGAAAAGTT

Alignment

ORF - retro_ogar_2762 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.28 %
• Parental protein coverage: 77. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VLQPDPGAAEGAAAQAVETPGWKTPEEAGQPENYEIRRYGPAKWVSTSVESMDWDSAIQTGFAKLSDYIQ
          VLQPDP..AE.A.AQAVET.G.K..E..GQP...EI...GPAK.VSTSVE.M..D.AIQT.F.KL..YI.
Retrocopy VLQPDPRVAESAVAQAVETLGCKA*EDEGQPQSCEIQHCGPAK*VSTSVETME*DLAIQTDFSKLNIYIH

Parental  GKNEKEMKIKVTAPVTSYVEPGSGPFSEPTITVSLYIPSELQFDPPRPSESDVFI-EDRAEMTVFVRSFD
          .KNEKEMKIK..APVTSY.E.GSGPFSEPTIT..L.I.S..QFD.PRPS.SDVF..ED.AE.TVF..SF.
Retrocopy CKNEKEMKIKMIAPVTSYWELGSGPFSEPTITIFLCILSDQQFDLPRPSGSDVFL>EDTAEITVFAWSFN

Parental  GFCSAQ-KNQEQLLTLANILREEGKV
          GF.....KNQEQLLTLANILREEGKV
Retrocopy GFSNVE<KNQEQLLTLANILREEGKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2762 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019060	1 retrocopy	retro_cjac_2727,
Dasypus novemcinctus	ENSDNOG00000008868	1 retrocopy	retro_dnov_1268,
Echinops telfairi	ENSETEG00000009265	1 retrocopy	retro_etel_973,
Homo sapiens	ENSG00000051620	1 retrocopy	retro_hsap_2333,
Gorilla gorilla	ENSGGOG00000001584	1 retrocopy	retro_ggor_1770,
Loxodonta africana	ENSLAFG00000013501	1 retrocopy	retro_lafr_752,
Otolemur garnettii	ENSOGAG00000005010	1 retrocopy	retro_ogar_2762 ,
Otolemur garnettii	ENSOGAG00000033976	1 retrocopy	retro_ogar_756,