RetrogeneDB ID: | retro_ogar_3039 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873700.1:1809136..1809541(-) | ||
Located in intron of: | ENSOGAG00000004278 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE2 | ||
Ensembl ID: | ENSOGAG00000015798 | ||
Aliases: | None | ||
Description: | non-SMC element 2, MMS21 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26513] |
Percent Identity: | 74.81 % |
Parental protein coverage: | 54.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SNSNSGSTGFISFSGVESALSSLKNFQACINSGMDTASSVALDLVETQTEVSSEYSMDKAMIEFAIMDRQ |
S.SNS.STGFISFSG..SA.SSLKN...CINSG.DT.S.VALDLVE.Q.EV..EY.MDKA..EF.....Q | |
Retrocopy | SDSNSDSTGFISFSGIKSAVSSLKNL*VCINSGTDTESCVALDLVEIQIEVNMEYTMDKAITEFVVIHQQ |
Parental | LNHYVKAVQSAINHVKEERPEKIPDLKVLVEKKFLALQNKNSDADFQNNEKFVQFKQQLKELKKQ |
LNHYV..VQS.INHVKEE.PEKIPDLKVLVEK..LALQNKNSDADF.NNE..VQFKQ.LK.LKKQ | |
Retrocopy | LNHYVNTVQSVINHVKEEHPEKIPDLKVLVEKIILALQNKNSDADFPNNEQLVQFKQ*LK*LKKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009394 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003542 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059586 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000015798 | 1 retrocopy |
retro_ogar_3039 ,
|
Rattus norvegicus | ENSRNOG00000003964 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005371 | 1 retrocopy |