RetrogeneDB ID:

retro_ogar_307

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:AAQR03195705.1:1..688(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:METTL9
Ensembl ID:ENSOGAG00000008169
Aliases:None
Description:methyltransferase like 9 [Source:HGNC Symbol;Acc:24586]


Retrocopy-Parental alignment summary:






>retro_ogar_307
ATTGAGAAATCGGGCTGGCTATTTATCCAATTATATCATTCTTTTGTGTCATCTGTTTTTAGCCTGTTTATGTCTAGAAC
ATCTATCAATGGGTTGTTAGGAAGAGGCTCAATGTTTGTGTTTTCACCAGATCAATTTCAGAGACTGCTTAAAATTAATC
CGGACTGGAAAACCCATAGACTTCTTGATTTAGGTGCTGGAGATGGAGAAGTCACAAAAATCATGAGCCCTCATTTTGAA
GAAATCTACGCCACTGAGCTTTCTGAAACCATGATATGGCAGCTTCAGAAAAAGAAATACAGAGTACTCGGTATAAATGA
ATGGCAGAATACAGGGTTCCAATATGATGTCATCAGCTGCTTGAATCTGTTGGACCGCTGTGATCAGCCCCTGACTTTGT
TAAAAGATATCAGAAGTGTTTTGGAGCCAACCAGAGGCAGGGTCATCCTTGCCTTGGTCCTACCCTTCCATCCTTATGTA
GAAAACGGTGGCAAGTGGGAGAAACCATCAGAAATTTTGGAAATCAAAGGACAGAACTGGGAAGAACAAGTGAATAGTCT
GCCTGAAGTTTTCAGAAAAGCTGGTTTTGTTATCGAAGCTTTCACCAGACTGCCGTACCTGTGTGAAGGCGACATGTATA
ATGACTACTATGTTCTGGATGACGCTGTCTTTGTTCTCAAACCAGTA

ORF - retro_ogar_307 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.57 %
Parental protein coverage: 81.27 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGE
IEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGE
RetrocopyIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGE
ParentalVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSV
VTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSV
RetrocopyVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSV
ParentalLEPTRGRVILALVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIEAFTRLPYLCE
LEPTRGRVILALVLPFHPYVEN.GGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIEAFTRLPYLCE
RetrocopyLEPTRGRVILALVLPFHPYVEN-GGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIEAFTRLPYLCE
ParentalGDMYNDYYVLDDAVFVLKPV
GDMYNDYYVLDDAVFVLKPV
RetrocopyGDMYNDYYVLDDAVFVLKPV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_307 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000205641 retrocopy
Mustela putorius furoENSMPUG000000168012 retrocopies
Oryctolagus cuniculus ENSOCUG000000042851 retrocopy
Otolemur garnettii ENSOGAG00000008169 3 retrocopies
retro_ogar_1745, retro_ogar_307 , retro_ogar_588,
Rattus norvegicus ENSRNOG000000259401 retrocopy



Copyright © RetrogeneDB 2014-2017