RetrogeneDB ID: retro_ogar_831

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:34414532..34415290(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UROS
• Ensembl ID: ENSOGAG00000010900
• Aliases: None
• Description: uroporphyrinogen III synthase [Source:HGNC Symbol;Acc:12592]

Sequence

>retro_ogar_831
CAAGAAGATAATGGTGGCCAGGATCCATCCATCAGGGAATTAGGTTTGTATGGACTTGAAGCCACGTTGATTCCTGTTTT
ATCATCTGAGTTTTTGTCTCTTCCCAGTTTCTCTAAGAAACTGTCTCATCCTGAAGGTTACGGGGGACTCATTTTTACCA
GTCCCAGAGCAGTGGAAGCCGTGGAGTTGTGTTTGGAGAAAGATAATAAAGCTAAAGTGTGAGAAAAGTCTCTGAAAGAA
AAATGCAGTGCTAAGTCGGTCTGTGTTGCTGGAAAGGCCACTGCTTCTCTGTGAGTAAAATTGGCCTGGATACAAAAGGA
GAAAACGGTGGAAATGCAGAAAAGCTCACAGAATATATTTGTTCCAGGGAGTCATCAGCATTACCTCTTCTGTTTCCCTG
TGGAAACCTCAAGAGAGAAATCCTGCCAAAAATGCTCCGGGATGAAGGGATCCCCATGGAGAGGCTCCCTGTCTATCAGA
CAGCCGCACACCCAGGAATCCAGGGGAACCTGACAGCTACTATTCCAAGCAGGGCATTCCAGCTGGCATTGCGTTTTCAG
TCCCTCTGGCTTTACCTACACTCTCAAGCATATTCAAGAGTTACCTGGTGACAGCATTGATCAAATTAAGTTTGCAGCCA
TTGGCCGCACCACAGCTCCTGCCAGGCTGCCCAGGGACTGCCCATGAGCTGCAATGCGGAGAGCCCCACGCTGTGGGCTC
TGGCCACGGGCCAGGTGCTGCAGCCTCCTGACCGCTGC

Alignment

ORF - retro_ogar_831 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.08 %
• Parental protein coverage: 96.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KEDDGGQDPYIRELGLYGLEATSIPVLSFEFLSLPSFSEKLSHPENYGGLIFTSPRAVEAVELCLEKDNE
          .ED.GGQDP.IRELGLYGLEAT.IPVLS.EFLSLPSFS.KLSHPE.YGGLIFTSPRAVEAVELCLEKDN.
Retrocopy QEDNGGQDPSIRELGLYGLEATLIPVLSSEFLSLPSFSKKLSHPEGYGGLIFTSPRAVEAVELCLEKDNK

Parental  AEVWEKSLREKWNAKPVYVVGKATASL-VSKIGLDTKGENCGNAEKLAEYICSRESSALPLLFPCGNLKR
          A.V.EKSL.EK..AK.V.V.GKATASL.VSKIGLDTKGEN.GNAEKL.EYICSRESSALPLLFPCGNLKR
Retrocopy AKV*EKSLKEKCSAKSVCVAGKATASL<VSKIGLDTKGENGGNAEKLTEYICSRESSALPLLFPCGNLKR

Parental  EILPKMLQAEGIPMESLTVYQTAAHPGIQGNL-NSYYSKQGLPAGIAF-FSPSGITYTLKHIQELSGDSI
          EILPKML..EGIPME.L.VYQTAAHPGIQGNL..SYYSKQG.PAGIAF.FSPSG.TYTLKHIQEL.GDSI
Retrocopy EILPKMLRDEGIPMERLPVYQTAAHPGIQGNL<DSYYSKQGIPAGIAF<FSPSGFTYTLKHIQELPGDSI

Parental  DQIKFAAIGPTTARA-LATQGLPVSCTAESPTPQALATGIRKALQPQDCC
          DQIKFAAIG.TTA.A..A.QGLP.SC.AESPT..ALATG....LQP.D.C
Retrocopy DQIKFAAIGRTTAPA<QAAQGLPMSCNAESPTLWALATG--QVLQPPDRC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_831 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000010900	1 retrocopy	retro_ogar_831 ,
Tursiops truncatus	ENSTTRG00000003172	1 retrocopy	retro_ttru_354,