RetrogeneDB ID: | retro_omer_20 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 3:23155968..23157009(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI03G22780 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI06G22050 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.59 % |
Parental protein coverage: | 58.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RAVLEDQFNSEVAFLSRLYHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLSSETILKLAL |
R...E.QF..EV..LSRL.HPN.V...A.C..P.VY.IITE.M..GTL..YL....PYSL..ET...LAL | |
Retrocopy | RREMEAQFDAEVSLLSRLRHPNVVRLVAVCREPEVYWIITELMRRGTLSAYLHGREPYSLPPETVVRLAL |
Parental | DISRGMEYLHAQGVIHRDLKSQNLLLNDEMRVKVADFGTSCLETACQATK--GNKGTYRWMAPEMTKEKP |
D..RGMEYLHA.GV.HRDLK..NLLL....RVKVAD.GTSCLE..C...K.....GT.RWMAPEM...K. | |
Retrocopy | DVARGMEYLHARGVVHRDLKPENLLLDGGGRVKVADLGTSCLEATCRRDKCSSKAGTFRWMAPEMIHDKR |
Parental | YTRKVDVYSFGIVLWELTTCLLPFQGMTPVQAAYAASEKNLRPPLSSSCSPVLNNLIKRCWSANPARRPE |
..RKVDVYSFG.VLWELTTCL.PFQ...PVQ.AY.......RPPLS.SC.P..N.LI.RCWS..PARRPE | |
Retrocopy | CNRKVDVYSFGLVLWELTTCLVPFQNLSPVQVAYSVCDRDARPPLSPSCPPAINSLIERCWSTEPARRPE |
Parental | FSYIVSVLEKYDHCVKEGMPIMAHQE |
F..IVSVLE.YD.C...G.P..A..E | |
Retrocopy | FKQIVSVLESYDRCLRQGLPVVALPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA023324 | 1 retrocopy | |
Oryza glumaepatula | OGLUM06G23210 | 1 retrocopy | |
Oryza meridionalis | OMERI06G22050 | 1 retrocopy |
retro_omer_20 ,
|
Oryza nivara | ONIVA06G26030 | 1 retrocopy | |
Oryza glaberrima | ORGLA06G0183600 | 1 retrocopy | |
Oryza rufipogon | ORUFI06G23740 | 1 retrocopy | |
Oryza sativa japonica | OS06G0636600 | 1 retrocopy |