RetrogeneDB ID: | retro_opri_646 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_2162:82816..83530(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC109B | ||
Ensembl ID: | ENSOPRG00000017044 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 109B [Source:HGNC Symbol;Acc:26076] |
Percent Identity: | 98.33 % |
Parental protein coverage: | 85.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TLPSRKERCQFVVQPVLS-TVGSF-LQDLQSEDKGVTAAAVIAADGSEIPASTLMGTLLMKDFKLVINEV |
.LPSRKERCQFVVQPVLS.TVGSF.LQDLQSEDKGVTAAAVIAADGSEIPASTLMGTLLMKDFKLVINEV | |
Retrocopy | SLPSRKERCQFVVQPVLS<TVGSF>LQDLQSEDKGVTAAAVIAADGSEIPASTLMGTLLMKDFKLVINEV |
Parental | AYDVQCPNKGNLTNEHIPEMESVKALVHRLFTVLHLEEFQKRREHLLLEKIDHLKRQLQPLEQVKARLEA |
AYDVQCPNKGNLTNEHIPEMESVKALVHRLFTVLHLEEFQKRREHLLLEKIDHLKRQLQPLEQVKARLEA | |
Retrocopy | AYDVQCPNKGNLTNEHIPEMESVKALVHRLFTVLHLEEFQKRREHLLLEKIDHLKRQLQPLEQVKARLEA |
Parental | RSEANTSRLLWAGLALLSTQGGALAWLTWWVYSWDIMEPVTYFITFANSMVFFAYFIVTR-SYTYSAVRS |
RSEANTSRLLWAGLALLSTQGGALAWLTWWVYSWDIMEPVTYFITFANSMVFFAYFIVTR.SYTYSAVRS | |
Retrocopy | RSEANTSRLLWAGLALLSTQGGALAWLTWWVYSWDIMEPVTYFITFANSMVFFAYFIVTRQSYTYSAVRS |
Parental | RQFLQFFHKKSKQQHFDVEQYNRLKEDLAK |
RQFLQFFHKKSKQQHFDVEQYNRLKEDLAK | |
Retrocopy | RQFLQFFHKKSKQQHFDVEQYNRLKEDLAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000013586 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002726 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000017044 | 1 retrocopy |
retro_opri_646 ,
|
Vicugna pacos | ENSVPAG00000009837 | 1 retrocopy |