RetrogeneDB ID: | retro_oruf_15 | ||
Retrocopylocation | Organism: | Brownbeard rice (Oryza rufipogon) | |
Coordinates: | 3:20493787..20494771(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ORUFI03G25290 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ORUFI06G23740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.06 % |
Parental protein coverage: | 68.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LFIGNKFASGANSRIYRGIYKQRAVAVKMVRIP----ERDEARRAVLEDQFNSEVAFLSRLYHPNIVQFI |
L..G.K.ASG.NSRI.RG.Y....VAVK....P......D...R...E.QF..EV..LSRL.HPN.V... | |
Retrocopy | LLLGPKIASGSNSRIHRGMYGEQPVAVKIMHAPVGDDDDDVQVRREMEAQFDAEVSLLSRLRHPNVVRLV |
Parental | AACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLSSETILKLALDISRGMEYLHAQGVIHRDLKSQNLLLN |
..C..P.VY.IITE.M..GTL..YL....PYSL..ETI..LALD..RGMEYLHA.GV.HRDLK..NLLL. | |
Retrocopy | GVCREPEVYWIITELMRRGTLSAYLHGREPYSLPPETIVRLALDVARGMEYLHARGVVHRDLKPENLLLD |
Parental | DEMRVKVADFGTSCLETACQATK--GNKGTYRWMAPEMTKEKPYTRKVDVYSFGIVLWELTTCLLPFQGM |
...RVKVAD.GTSCLE..C...K.....GT.RWMAPEM...K...RKVDVYSFG.VLWELTTCL.PFQ.. | |
Retrocopy | GGGRVKVADLGTSCLEATCRGDKCSSKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNL |
Parental | TPVQAAYAASEKNLRPPLSTSCSPVLNNLIKRCWSANPARRPEFSYIVSVLEKYDHCVKEGMPIMAHQE |
.PVQ.A........RPPLS.SC.P..N.LIKRCWS..PARRPEF..IVSVLE.YD.C...G.P..A..E | |
Retrocopy | SPVQVAFSVCDRDARPPLSPSCPPAINSLIKRCWSTEPARRPEFKQIVSVLESYDRCLRQGLPMVALPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA023324 | 1 retrocopy | |
Oryza glumaepatula | OGLUM06G23210 | 1 retrocopy | |
Oryza meridionalis | OMERI06G22050 | 1 retrocopy | |
Oryza nivara | ONIVA06G26030 | 1 retrocopy | |
Oryza glaberrima | ORGLA06G0183600 | 1 retrocopy | |
Oryza rufipogon | ORUFI06G23740 | 1 retrocopy |
retro_oruf_15 ,
|
Oryza sativa japonica | OS06G0636600 | 1 retrocopy |