RetrogeneDB ID: | retro_pabe_1181 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:61664063..61664424(-) | ||
Located in intron of: | ENSPPYG00000005876 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRM | ||
Ensembl ID: | ENSPPYG00000001892 | ||
Aliases: | None | ||
Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
Percent Identity: | 58.54 % |
Parental protein coverage: | 69.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLC |
ES........L...ALK..G.LCC.G.CQW..LDL.K.M.QFC..LFP.V...YCTIPTY.SGQI.FM.C | |
Retrocopy | ESYYQLMKTVLRRAALKTHGILCCPGDCQWPYLDLTKKMQQFCMPLFPMVGCTYCTIPTYRSGQISFMMC |
Parental | SK-NPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAA-FVLPEFARKALNDVS |
SK.NPST.F.E.V..LTQ..V....LKY..SDVH.AA.F.LP.FA.K.LND.S | |
Retrocopy | SK<NPSTKFWESV*QLTQKLVEHT*LKYCKSDVHQAA<FLLPKFAHKTLNDLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 38 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .69 RPM |
SRP007412_heart | 0 .06 RPM | 6 .41 RPM |
SRP007412_kidney | 0 .07 RPM | 16 .18 RPM |
SRP007412_liver | 0 .03 RPM | 15 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002354 | 4 retrocopies | |
Homo sapiens | ENSG00000116649 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009532 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001892 | 3 retrocopies |
retro_pabe_1181 , retro_pabe_1828, retro_pabe_2044,
|
Pan troglodytes | ENSPTRG00000000138 | 3 retrocopies |