RetrogeneDB ID: | retro_pabe_2044 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:5918875..5919171(+) | ||
Located in intron of: | ENSPPYG00000012755 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRM | ||
Ensembl ID: | ENSPPYG00000001892 | ||
Aliases: | None | ||
Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
Percent Identity: | 75. % |
Parental protein coverage: | 56.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGPAESLFKESYYQ-LMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQI |
.G.AESLFKESYY..LMK.AL..D..LCCQGE.QWLHLDLIKE...FCQSLFP.V..AYCT.PTYPSGQ. | |
Retrocopy | LGSAESLFKESYYH<LMKMALNKDSILCCQGEYQWLHLDLIKETW*FCQSLFPMVVHAYCTVPTYPSGQT |
Parental | GFMLCSKNPSTNFQEPVQPLTQQQVAQMQL |
GFMLCSKNPSTNFQ.P.Q..T.QQV.Q.QL | |
Retrocopy | GFMLCSKNPSTNFQKPMQQVTRQQVEQVQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 38 .26 RPM |
SRP007412_cerebellum | 0 .12 RPM | 6 .69 RPM |
SRP007412_heart | 0 .00 RPM | 6 .41 RPM |
SRP007412_kidney | 0 .03 RPM | 16 .18 RPM |
SRP007412_liver | 0 .00 RPM | 15 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002354 | 4 retrocopies | |
Homo sapiens | ENSG00000116649 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009532 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001892 | 3 retrocopies |
retro_pabe_1181, retro_pabe_1828, retro_pabe_2044 ,
|
Pan troglodytes | ENSPTRG00000000138 | 3 retrocopies |