RetrogeneDB ID: | retro_pcap_280 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_257438:581..1217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALG14 | ||
Ensembl ID: | ENSPCAG00000014267 | ||
Aliases: | None | ||
Description: | ALG14, UDP-N-acetylglucosaminyltransferase subunit [Source:HGNC Symbol;Acc:28287] |
Percent Identity: | 75.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LEGALILAALGGGTMAVYLLLRLWVVGH-FVVSRESL-SLLLVAAGGHTTEILRLVGSLSDAYSPRHYVF |
.EG..ILAALGGG..AV...L.L..V.H..VVS..S...L.....GGHTTE.LRLV..LSDAYSP.HY.F | |
Retrocopy | IEGTFILAALGGGMVAVFAVLWL*AVLHRRVVSCDSV<LLVVARSGGHTTEVLRLVVRLSDAYSPKHYIF |
Parental | ADTDEMSAHKIKAFELDRAKRYSTTMYTTDRIPRSREVQQSWLSTVLTTVYSMLYSF-PLTFKLKPDLVL |
ADT.EMSAHKIKAFE.D.AK.YSTT.YTTD..PRSREV.QSW.STVLTT.YSMLYS..PLTF.LKPDLVL | |
Retrocopy | ADTGEMSAHKIKAFERDGAKKYSTTKYTTDQNPRSREVWQSWVSTVLTTLYSMLYSL>PLTFRLKPDLVL |
Parental | CNGPGTCVPICISALLLGILGVKKVIIVYVESVCRVETLSLSGKILYYLSDYFIVQWPTLKEKYPKSVYL |
CNGP.TCVPI.ISALLL.ILG.KKVI.VYVESVCRVETL.LSG.IL.YLSDYFI.QWPTLKEKYPKSVYL | |
Retrocopy | CNGPRTCVPIYISALLLWILGIKKVITVYVESVCRVETLALSGTILCYLSDYFIFQWPTLKEKYPKSVYL |
Parental | GRIV |
G.IV | |
Retrocopy | G*IV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000008564 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014267 | 1 retrocopy |
retro_pcap_280 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000025476 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016557 | 1 retrocopy |