RetrogeneDB ID: | retro_pcap_361 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_4960:18678..19605(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH3G | ||
Ensembl ID: | ENSPCAG00000008973 | ||
Aliases: | None | ||
Description: | isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386] |
Percent Identity: | 69.26 % |
Parental protein coverage: | 78.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HACVPVDFEEVHVSTA-DEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHC |
H..VPVDFEEV.V..A...EDI.NAI..IRRN.VALKGN..TN.NLP..H.S.N..LRTSLDL.A.V.HC | |
Retrocopy | HVRVPVDFEEVQVHSACSVEDIHNAILSIRRNGVALKGNTATNLNLPSTHSSLNTVLRTSLDLFASVVHC |
Parental | KSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQDSGRKKVTA |
KSLP.VVT.H.D.DI...RE.TEGEYS.LEHESV.GVVE.LKI.T..KSLRIAEYAF.LA...GRKKVTA | |
Retrocopy | KSLPSVVTHHSDVDIIVIRESTEGEYSNLEHESVNGVVETLKITTESKSLRIAEYAFQLAEELGRKKVTA |
Parental | VHKANIMKLGDGLFLQCCREVAAGYPQITFENMIVDNATMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLV |
VHKAN.MKL.DGLFLQCC.EVA..YPQ.TFE.M.VD..T.QLV..P.QFDVMVMPNLYGN...N.C.GLV | |
Retrocopy | VHKANVMKLTDGLFLQCCTEVASRYPQVTFESMNVDYTTKQLVTQPEQFDVMVMPNLYGNVISNICTGLV |
Parental | GGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCVMLDHLQLHSYATSIRKAVLASMDN |
GG.GLV.GA.YG..YAVFET.TR..GK.IA.KN.ANPTA.LLASC.MLD.L.L.SYATSIR.AVL..... | |
Retrocopy | GGAGLVPGASYGQLYAVFETGTRQIGKYIAKKNVANPTAILLASCIMLDYLELNSYATSIRNAVLEALNY |
Parental | ENMHTPDIGGQGTTSEAIQDIIRHIRIIN |
..MHTPDIGG..TTSE.I..I...I.I.N | |
Retrocopy | KDMHTPDIGGYSTTSEIIEYIMNRIQI*N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000006029 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015625 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000007365 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013934 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016554 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000008973 | 1 retrocopy |
retro_pcap_361 ,
|
Pan troglodytes | ENSPTRG00000024398 | 1 retrocopy |