RetrogeneDB ID: | retro_pcap_451 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_94416:8899..9624(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000010687 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDHA1 | ||
Ensembl ID: | ENSPCAG00000004196 | ||
Aliases: | None | ||
Description: | pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806] |
Percent Identity: | 54.94 % |
Parental protein coverage: | 62.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 8 |
Parental | VLSGAAQKPASRVLVASRNFANDA-TFEI-KKCDLHRLEE-GPPVTTVLTREDGL-RYYRMMQTVRRM-E |
V.S..AQKPA.RVL.AS.N..N...TFEI.KKC.L..LEE.GP..T.VL...DGL...Y..M.TV..... | |
Retrocopy | VASRTAQKPAGRVLMASCNSVNNV<TFEI<KKCNLQGLEE<GPLLTSVL-KKDGL<QCYKAMHTVSLI<R |
Parental | LKADQLYKQK-IIRGFCHLCDGQEACCVGLEAGINPTDHLITAYR-AHGFTFTRGLSVREILAELTGRRG |
...DQLYKQK.I.RGFCH.CDGQE.CCVGLEA...PTD...TA...AHGF.FT.G..V..IL..L..... | |
Retrocopy | VETDQLYKQK>ITRGFCHMCDGQEVCCVGLEASVTPTDQNTTASG<AHGFSFTCGFTVAPILT*LARHKE |
Parental | GCA-KGKGGSM-HMYAKNFYGGNGIVGAQVPLGAGIALACKYNGK-DEVCLTLYGDGAANQGQIFEAYNM |
..A.KG....M....A.NF.......GAQV.L.A..ALA.K.N.K.DEV..TLYG.G.ANQ.......N. | |
Retrocopy | ETALKGRCLCMLSTHAENFHRSKDSAGAQVSLEAATALASKHNRK>DEVLVTLYGNGTANQVRQLKLVNT |
Parental | AALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLR |
A...KLP.IF.CENN.YGMGTSVE.AAASTD...RG...PGLR | |
Retrocopy | APR*KLPFIFLCENNCYGMGTSVETAAASTD-KERGNLTPGLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000001392 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009426 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017336 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000004196 | 1 retrocopy |
retro_pcap_451 ,
|
Sarcophilus harrisii | ENSSHAG00000015375 | 1 retrocopy |