>retro_pper_42
ATGAGTTCAAGAAGAGGTGGTGGAAATTCCAAAGGGAAGGAAGTTCGTGAAGTCAATAGCCCGAAGGTTAAGCAGTTGAG
CCATGGTGTAGCAGACATTAGCCTGGACTCGGCACAAGACGATGGAGAGTGGGCGGTAATTTCCAGAAAATCCAAGAACA
GAGCTGGTAGCAGTGCTGCAAAACTAGTCCAATTGGGTCCTCAAAATTCTAATTATAAGGCGTGGGCACCGGCACATGAT
GCTCAGAAGCCAAGTATGCGAAATGGAACTGGTGGTTCACAAACTGCTAATTCTCAAAAACCAGCTGGAGGAAGAAATGC
AAGGCAGCAGCCTAACAGTACTGGTGGTTTTGGAAGCAACTTTGTGGCCCGGCAACATTTGATTCCCCCTCCCCTGGACC
ATGGATGGAATTGGCAATCTAGAGCTGGTAAAAAAGACAACAATGTGGCTGCTGCTCTCGCTGATGATAATGATGATGAC
AACTCTGATCATATGAGCGACACTGACGAATATGATGACGAGCTATTCAGTGATGAGTTTGACTCGGATTCAAGTGAAAA
GAGCCATGGCACTAGGAAGCAAAATAGATGGTTCAAGAAATTCTTTGAAAATTTGGATGGTTTAAGTGGAGGTGAGATTG
GTAATCCTGACAGACAGTGGCACTGTCCTGCATGCAAAGGTGGTCGTGGTGCCATTGACTGGTACCAAGGCGTGCAGCCC
CTGAAGAGACATGCCGAAACAAAAGGATCAAATAGGGTGAAGCTCCACAGAGAATTTGCAAAACTTTTGGATGTGGAGTT
GCAGATGAGAGGAGTTATGACTCAATCTGTGGCTGCGGGTGAAGTATTTGGTAAATGGGTAGGTTTAAAAGATGAGGAAA
AGGATTCCAAAATTGTCTGGCCTCCGATGGTTGTCATCACGAATACTAGACTTGAAAAGGATGAAAGTGGAAAGTGGATT
GGTATGGGAACCGAGGAGCTTGCTGAATACTTCGGATCTTATCCTTATTTGAAGACTCGACACTCGTATGGTCCGCAGGG
ACACTGTGGTATGAGCATTTTGATTTTTGAGGCCTCAGCAATAGGCCATTTTGAGGCTGGGCTGCTGCACAAGAATTTTG
CAGTGCAAGGATTAGGCAGGGATACTTGGGATTGTGGTCCTATCTTGTTTCGTGCAGGTGGTATTCGACAGCTTTACGGT
TACATGGCAGTGAAACGAGACTTGGATATATTCAACCAGCATACCGAGGAGAAATCTAAGCTGAAATTTGAGCTGAGATC
TTACCAAGAGGTGGTCCTACACCCAATGAGGCAAATGAGTGCGGACAGCCAACAGGTTATTTGGTTGAAGGACAAACTTC
CTATAGAACAGAGGCTTAGAAAAGATGCTGAACAGACTAATGAGATACTTCGTGACAAGCTCGAGAAGGTGCAGGAGGAA
AATCGCATTTTAAAACGGAGAATAAAAATGCAGCTTGAGGAGAACAAGGAAGAGATGGATCTGCAAGAAGAATTTTACAA
AGATATAATGTCTCGTACCCGAGATTGA
ORF - retro_pper_42 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.76 % |
Parental protein coverage: |
61.3 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KDGNVAAAKAND-DDDNSDAVGDS---DDELYSDEFDSDSSEKSHETRKSSRWFKKFFEILDSLTVDEIN |
| KD.NVAAA.A.D.DDDNSD...D....DDEL.SDEFDSDSSEKSH.TRK..RWFKKFFE.LD.L...EI. |
Retrocopy | KDNNVAAALADDNDDDNSDHMSDTDEYDDELFSDEFDSDSSEKSHGTRKQNRWFKKFFENLDGLSGGEIG |
|
Parental | DPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVMLHRELAELLDEELRRKG--TTVVPAGEAFG |
| .P.RQWHCPAC.GG.GAIDWY.G.QPL..HA.TKGS.RV.LHRE.A.LLD.EL...G..T..V.AGE.FG |
Retrocopy | NPDRQWHCPACKGGRGAIDWYQGVQPLKRHAETKGSNRVKLHREFAKLLDVELQMRGVMTQSVAAGEVFG |
|
Parental | KWKGLKDEEKDHEIVWPPMVVIMNTRLEQDENEKWIGMGNQELLDYFSSYAAVRARHSYGPQGHRGMSIL |
| KW.GLKDEEKD..IVWPPMVVI.NTRLE.DE..KWIGMG..EL..YF.SY.....RHSYGPQGH.GMSIL |
Retrocopy | KWVGLKDEEKDSKIVWPPMVVITNTRLEKDESGKWIGMGTEELAEYFGSYPYLKTRHSYGPQGHCGMSIL |
|
Parental | IFEASARGYLEAERLHKHFTEQGTDRDAWDRRRVLFHSGGKRQLYGYMAVKEDLDIFNQHSQGKSKLKFE |
| IFEASA.G..EA..LHK.F..QG..RD.WD....LF..GG.RQLYGYMAVK.DLDIFNQH...KSKLKFE |
Retrocopy | IFEASAIGHFEAGLLHKNFAVQGLGRDTWDCGPILFRAGGIRQLYGYMAVKRDLDIFNQHTEEKSKLKFE |
|
Parental | MRSYQEMVVNQIRQMSEDNQQLNWFKNKVAKEQRHAKALEESLGIVSEKLRKTTEENRIVRQRTKMQHEE |
| .RSYQE.V....RQMS.D.QQ..W.K.K...EQR..K..E....I...KL.K..EENRI...R.KMQ.EE |
Retrocopy | LRSYQEVVLHPMRQMSADSQQVIWLKDKLPIEQRLRKDAEQTNEILRDKLEKVQEENRILKRRIKMQLEE |
|
Parental | NKEEMYLQEQFFKD |
| NKEEM.LQE.F.KD |
Retrocopy | NKEEMDLQEEFYKD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_42 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.