RetrogeneDB ID: | retro_ptro_1220 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:27080064..27080504(-) | ||
Located in intron of: | ENSPTRG00000008956 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME4 | ||
Ensembl ID: | ENSPTRG00000007541 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:7852] |
Percent Identity: | 65.13 % |
Parental protein coverage: | 88.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | GGGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFE-RRGFTLVGMKMLQA-PESVLAEHYQDLRRKPFYPA |
G.GGP....E.TLV..KP.GV..R.V.DVIQRF..R.GF.LVGMK.L...PESVLAEHYQDLRRKP.YPA | |
Retrocopy | GSGGPFLIQEWTLVSLKPVGVLWRPVRDVIQRFG<RQGFKLVGMKILWP>PESVLAEHYQDLRRKPLYPA |
Parental | LIRYMSSGPV-VAMVWEGYNVVRASRAMIG-HTDSAEAAPGTIRGDFS-VHISRNVIHASDS-VEGAQRE |
L..Y.SS.PV..A.VWEGY.V..ASRAMI...TD..EA...TI.GDFS.VHISRN.IH.S.S...G.Q.E | |
Retrocopy | LLSYVSSRPV>MAVVWEGYKVIHASRAMID<YTDRVEADSVTIWGDFSDVHISRNIIHTSYS<RVGGQKE |
Parental | IQLWFQSSELVS |
IQLWF.SS.LV. | |
Retrocopy | IQLWFESSKLVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .93 RPM |
SRP007412_heart | 0 .00 RPM | 46 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 63 .68 RPM |
SRP007412_liver | 0 .00 RPM | 62 .00 RPM |
SRP007412_testis | 0 .11 RPM | 18 .97 RPM |