RetrogeneDB ID: | retro_rnor_2474 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:101278595..101279648(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000004906 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gpd1l | ||
Ensembl ID: | ENSRNOG00000026455 | ||
Aliases: | None | ||
Description: | glycerol-3-phosphate dehydrogenase 1-like protein [Source:RefSeq peptide;Acc:NP_001178814] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAPLKVCIVGSGNWGSAVAKIIGSNVKNLQKFSSTVKMWVFEETVNGRKLTDIINNDHENVKYLPGHK |
M.A..L.VCIVG...WGSA.AKIIG.NVKN.QKF.STVKMWV.EE.VNGRKLTDIIN..HENVKYLPGHK | |
Retrocopy | MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHK |
Parental | LPENVVAVPNLGEAVQDADLLVFVIPHQFIHKICDEITGRVPKKAVGITLIKGIDEGPDGLKLISDIIRE |
LPENVVAV.NL.EAVQDADLLVF..PHQFIHKIC.EITGRVPKKA.GI.....IDEGP.GL.LISDIIRE | |
Retrocopy | LPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIRE |
Parental | KMGIDISVLMGANIASEVAAEKFCETTIGSKVLQNGLLFKELLQTPNFRITVVDDADTVELCGALKNIVA |
K.G.D.SVLMGAN.A.EVAA..FCETTIGSKV.QNG.LFKELLQT.NF.ITVVDDAD.VELCGALK.IVA | |
Retrocopy | KIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVA |
Parental | VGAGFCDGLCCGDNTKAAVIRLGLMEMIAFAKIFCKGQVSTATFLESCGVADLITTCYGGRNRKVAEAFA |
.G..FC.GL.CG.N.KAAV.RLGL.EMI.F..IFCK.QVST.TFLESCG.A..IT.CY.G...K.A..F. | |
Retrocopy | MGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFP |
Parental | RTGKTIEELEKELLNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQICYEGRPVTQMLSCLQSHPEH |
R.GKT...L.KE.LNGQ.LQG..TSA.VY..LKQKGLL.KFPLF..VY.ICYEGRP.T..L.CLQ.HP.H | |
Retrocopy | RIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAH |
Parental | I |
. | |
Retrocopy | M |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 105 .58 RPM |
SRP017611_liver | 0 .00 RPM | 14 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1348 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009826 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012633 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013996 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011060 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050627 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010093 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013243 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016132 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026455 | 2 retrocopies |
retro_rnor_2035, retro_rnor_2474 ,
|
Sus scrofa | ENSSSCG00000021977 | 1 retrocopy |