RetrogeneDB ID: | retro_rnor_2899 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:20664801..20665374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000002491 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rhoa | ||
Ensembl ID: | ENSRNOG00000050519 | ||
Aliases: | Rhoa, Arha, Arha2 | ||
Description: | Transforming protein RhoA [Source:UniProtKB/Swiss-Prot;Acc:P61589] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVEL.LWDT.GQEDYD.LR | |
Retrocopy | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELPLWDTTGQEDYDCLR |
Parental | PLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP |
PLSYPDTD.ILMCFS.DSPD..S..N...K....V...CP...IILVGNKKDL.ND.HTRRELAKMKQE. | |
Retrocopy | PLSYPDTDIILMCFSLDSPDSPSQKNGLQKSSISVQ-MCPS--IILVGNKKDLQNDAHTRRELAKMKQEL |
Parental | VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLI |
VKPEEGRDMANRIG.FGYME.SAKTKDGVREVFEMATRAALQARRGKKKSGCLI | |
Retrocopy | VKPEEGRDMANRIGTFGYMEGSAKTKDGVREVFEMATRAALQARRGKKKSGCLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 160 .19 RPM |
SRP017611_kidney | 0 .77 RPM | 341 .30 RPM |
SRP017611_liver | 0 .13 RPM | 124 .12 RPM |