RetrogeneDB ID: retro_sara_233

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_117737:300..681(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000008136
• Aliases: None
• Description: None

Sequence

>retro_sara_233
CCTGAACTCACCGGTGTTTTATTTTCTCTTTATTCAGGGATCTGGGCACAGACAGCTCTGTCTCAGCCTCCCTCAGTGTC
TGGGACTCAGGGACAGACAGTCACCATCTCCTGTACAGGAACAAGCAATGACATTGGGAGATATGACTATGTCTCCTCGT
TCCAGCAGCAGGAGGGCACAGCCCCCAAAATGCTGATATATAATGTCAATAAGCGGCCGTCAGGGAGCCCTGATCGCTTC
TCTGGCTCCAAGTCTGGCAACACAGCGACCTTGACCATCTCTGGGCTCAAGGCTGAGGATGAGACTGATTATTACTGTAT
ATCATATGTAAGTGGTGACACTTTCCACAGTAGCTTCTATATACAGGGAAGTGAGACAAAA

Alignment

ORF - retro_sara_233 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.02 %
• Parental protein coverage: 52.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PLLLGLLVHC-TGIWAQSALTQPPSVSGTPGQTVTISCTGTSNDIGGYNLVSWYQQQEGTAPKMLIYDVN
          P.L.G.L.....GIWAQ.AL.QPPSVSGT.GQTVTISCTGTSNDIG.Y..VS..QQQEGTAPKMLIY.VN
Retrocopy PELTGVLFSLYSGIWAQTALSQPPSVSGTQGQTVTISCTGTSNDIGRYDYVSSFQQQEGTAPKMLIYNVN

Parental  KRPSGIPDRFSGSKSGNTATLTISGLRPEDELDYYCGSYRRGGQHSSLCYIFGAGTK
          KRPSG.PDRFSGSKSGNTATLTISGL..EDE.DYYC.SY..G....S..YI.G..TK
Retrocopy KRPSGSPDRFSGSKSGNTATLTISGLKAEDETDYYCISYVSGDTFHSSFYIQGSETK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_233 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000008136	1 retrocopy	retro_sara_233 ,