RetrogeneDB ID: | retro_sara_495 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_227143:4799..5262(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED6 | ||
Ensembl ID: | ENSSARG00000002553 | ||
Aliases: | None | ||
Description: | mediator complex subunit 6 [Source:HGNC Symbol;Acc:19970] |
Percent Identity: | 84.91 % |
Parental protein coverage: | 65.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | NLLGISWVDSAWIPILNSGSVLDYFSERSNPF-YDRTCN-NE-VVKMQRLTLEHLNQMVGVEYILLHAQE |
NLLGI.WVDSA.IPILN.GSVLDYFSERSNPF..DRTC..NE.VVKM..L.LEHLNQ.VGVEY.L..AQE | |
Retrocopy | NLLGIFWVDSARIPILNRGSVLDYFSERSNPF<FDRTCK<NE<VVKMHGLMLEHLNQVVGVEYLLSRAQE |
Parental | PILFIIRKQQRQSPTQVVPMADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGY |
PILFIIRKQQRQSPTQVVPMADYYIIAGVIY.APDLG.V.NSRVL.AVHGIQSAFD.A.SYCRYH..KGY | |
Retrocopy | PILFIIRKQQRQSPTQVVPMADYYIIAGVIYHAPDLG*VTNSRVLIAVHGIQSAFDKARSYCRYHLFKGY |
Parental | -WWHFKDHEEQDKVKPKAK |
.WWHFKDHEEQDKVKPKAK | |
Retrocopy | >WWHFKDHEEQDKVKPKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013091 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017357 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007174 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000001311 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008957 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002553 | 1 retrocopy |
retro_sara_495 ,
|
Tupaia belangeri | ENSTBEG00000002302 | 1 retrocopy |