RetrogeneDB ID: | retro_shar_251 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL835059.1:51872..52155(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC12 | ||
Ensembl ID: | ENSSHAG00000003265 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:28332] |
Percent Identity: | 60.4 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KEDEEPKNKVLKEEEGGEKHRELKLRNYVPEDEELKKRKVPQAKPASVEEKV-KDQLEAAK-PEPIIEEV |
.E....KNK...EEE..EKH.ELKL.NY.P.D.ELKKRK....KPASV.EKV.K...E..K...PI.EEV | |
Retrocopy | RENIRHKNKE-DEEERSEKHKELKLWNYSPKDVELKKRK---SKPASVKEKV<KRLVERSK<SQPIVEEV |
Parental | DLA---NLAPRKPDWDLKRDVAKKLEKLEKR |
D.A...NLA.RKPDW.LKRDV.KKLE...KR | |
Retrocopy | DFANLTNLALRKPDWNLKRDVEKKLERPKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002280 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000016567 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000030 | 2 retrocopies | |
Homo sapiens | ENSG00000160799 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000019659 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006219 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005086 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013924 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000014862 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003265 | 1 retrocopy |
retro_shar_251 ,
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