>retro_shar_57
GCCGCGACGGAGGTCGTCGGGGTCACGGCCCAGGTCGCGTTCCCGGCGGAAGACGAGGACTCCGTCTCGAACCAGCTGAC
CCCCTACCACACCCACTGGGTGGGACACTCCAAGAACCTGGTGGAACTCGCGCAGCAGGTGCAGAAGGCGGACGAATTCA
TCGAAGCCAATGCCACCAACAAGCTGATAGTGATCGCTCAGCAAATCAGCCACCTGCAAACCCAGGCCAGCAAGATACTG
GAAGACGCCCAAAGGGACGCCGAGCTGCACCATGCCGCTTGCAACATGGTGAAGAAGCCTGGAAACATCTACTACCTCTA
CAAGCGGGACAACGGGCAGAAATACTTCTCCATTATTTCGCCAAAGGAGTGGGGGCCGAGCTGTCCCCATGACTTTCTCG
GCGCCTACAAGCTCCAGCACGATCTCTCCTGGACTCCCTTCGACAACATCGAGAAACAAGAGGCCGAAATCGGCATCGTG
GACAAGTTTCTGAGCCAGCAGATGGCCCTGCCCCAGTGCACAGAGCCCAACTTCCAGGGCCTCACCTAG
ORF - retro_shar_57 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.28 % |
Parental protein coverage: |
99.32 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EDLGELAQQVQKADEFIRANATNKLIVIAEQIRHLQTQARKVLEDAQRDAELHHAACNMVKKPGNIYYLY |
| ..L.ELAQQVQKADEFI.ANATNKLIVIA.QI.HLQTQA.K.LEDAQRDAELHHAACNMVKKPGNIYYLY |
Retrocopy | KNLVELAQQVQKADEFIEANATNKLIVIAQQISHLQTQASKILEDAQRDAELHHAACNMVKKPGNIYYLY |
|
Parental | KRDNGQQYFSILSPKEWGASCPHDFLGAYKLQHDLSWTPFDNIGKQDAELGIMDKLLSQQMALPECTEPN |
| KRDNGQ.YFSI.SPKEWG.SCPHDFLGAYKLQHDLSWTPFDNI.KQ.AE.GI.DK.LSQQMALP.CTEPN |
Retrocopy | KRDNGQKYFSIISPKEWGPSCPHDFLGAYKLQHDLSWTPFDNIEKQEAEIGIVDKFLSQQMALPQCTEPN |
|
Parental | FQGLT |
| FQGLT |
Retrocopy | FQGLT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_57 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.