RetrogeneDB ID: retro_tbel_4617

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_93262:2974..3190(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C4orf33
• Ensembl ID: ENSTBEG00000014766
• Aliases: None
• Description: chromosome 4 open reading frame 33 [Source:HGNC Symbol;Acc:27025]

Sequence

>retro_tbel_4617
GCATTTTTCTTGAATAATGTAAGTGAGCAGTATTTAGAGGTTGAACTTTGTCTCCATGGCCAATAGTTAGTGCTTTTACT
CTATGGAGGAAGAAACGTGTGGAAACAAGAACTTTCTTTATCATTCGGTGTGCACAGAGCAGAGACAAAATGAGAAGGGA
AAGCTTATCTTCCTTGGAGTTATTTTCCACCAAATGTGACAAAATTCAGTTCATGG

Alignment

ORF - retro_tbel_4617 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.94 %
• Parental protein coverage: 52.17 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AFFLNDVTEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFSVSGAETKWEGKAYLPWSYFPPNVTKFN
          AFFLN.V.EQYLEVELC.HGQ.LVLLL.G.RNVWKQEL.LSF.V..AETK.EGKAYLPWSYFPPNVTKF.
Retrocopy AFFLNNVSEQYLEVELCLHGQ*LVLLLYGGRNVWKQELSLSFGVHRAETK*EGKAYLPWSYFPPNVTKFS

Parental  SF
          S.
Retrocopy SW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_4617 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_4617 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Mus musculus	ENSMUSG00000025766	1 retrocopy	retro_mmus_1879,
Otolemur garnettii	ENSOGAG00000010368	1 retrocopy	retro_ogar_2045,
Rattus norvegicus	ENSRNOG00000038330	1 retrocopy	retro_rnor_533,
Tupaia belangeri	ENSTBEG00000014766	1 retrocopy	retro_tbel_4617 ,