RetrogeneDB ID: retro_tbel_935

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_3348:399415..399706(+)
• Located in intron of: ENSTBEG00000010992

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACYP2
• Ensembl ID: ENSTBEG00000013671
• Aliases: None
• Description: acylphosphatase 2, muscle type [Source:HGNC Symbol;Acc:180]

Sequence

>retro_tbel_935
ATGGGGGGAGGGGACACCTTGATATCAGTAGATTATGAGCTTTTTGGGACAGTGCAAGGGGTGTTTGAATGTAAGTACAC
CCAGAATGAGAGTAAAAAGCTGGGATTGGTAGGCTCAGTTCAGAACACTGACTGGGGCACAGTGCAAGGCCAATTGCAAG
GTCCCATCTCCAAAGTGCATCACATGCAAGGATGGCTTGAGACAAAAGGAAGTCGCGAGTCACACACTGACAGAGCAGAC
TTCAACAGGAAGAAAGCTATCATCAAGTTGGATTACTCAGATTTCCAAATT

Alignment

ORF - retro_tbel_935 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.64 %
• Parental protein coverage: 97.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSTGEPLKSVDYEVFGRVQGVCFRMYTEGEAKKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSKVG
          M..G..L.SVDYE.FG.VQGV....YT..E.KK.G.VG.V.NT..GTV.GQ.QGP..KV..M..WL...G
Retrocopy MGGGDTLISVDYELFGTVQGVFECKYTQNESKKLGLVGSVQNTDWGTVQGQLQGPISKVHHMQGWLETKG

Parental  SPSSRIDRTDFSNEKTISKLEYSNFSI
          S..S..DR.DF...K.I.KL.YS.F.I
Retrocopy SRESHTDRADFNRKKAIIKLDYSDFQI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_935 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_935 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023070	1 retrocopy	retro_cfam_57,
Echinops telfairi	ENSETEG00000017888	1 retrocopy	retro_etel_1505,
Oryctolagus cuniculus	ENSOCUG00000015408	1 retrocopy	retro_ocun_1372,
Tupaia belangeri	ENSTBEG00000013671	1 retrocopy	retro_tbel_935 ,