RetrogeneDB ID: | retro_tsyr_1021 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_27760:3578..4434(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNF512 | ||
Ensembl ID: | ENSTSYG00000006511 | ||
Aliases: | None | ||
Description: | zinc finger protein 512 [Source:HGNC Symbol;Acc:29380] |
Percent Identity: | 77.16 % |
Parental protein coverage: | 53.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KGAAELEKMTLKCHHCEKPYRSKAGLAYHLRSEHGPIFFPESGQTECLKEMSLEPKSGGRVKRRSAKIAV |
K....L......C.....PY.SKAGLAYHLRSEHGPIFFPESGQ.E.LK.MSL.PKSG.RVKR.SAKIA. | |
Retrocopy | KRLGKLRCVRESCSQIARPYASKAGLAYHLRSEHGPIFFPESGQAEHLK-MSLAPKSGDRVKRWSAKIAA |
Parental | YHLQELASAELAKEWPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHKWKLDIKKYHRIRCPNQGCEAVY |
YHLQELASAELAKEWPKRKV.QD.VPDDRKLKYTRPGLPT.SQEVLHKWKLDIKKYH.IR.PNQ..EAVY | |
Retrocopy | YHLQELASAELAKEWPKRKVPQDPVPDDRKLKYTRPGLPTCSQEVLHKWKLDIKKYHPIR*PNQDYEAVY |
Parental | SSVSGLKAHLGSCPLGNFVAGKYKCLLCQKEFGSESGVKYHINSVHAEDWFVVNPTTTKSFEKLMKIKQR |
SSVSGLKAHLGSC.LGNF.AGK.KCLLCQKEFGSESGVK.HI.S.HAEDWFVVNP.TTKS..K..K.KQ. | |
Retrocopy | SSVSGLKAHLGSCLLGNFAAGKSKCLLCQKEFGSESGVKCHISSLHAEDWFVVNPATTKSIQKVRKMKQQ |
Parental | QQE-EERRRQQHQSRRSLRRQQQPSMEPPEAELSLRAGKDQRRNQDLGVSSSCKEPEQEPVPALQKVKPP |
QQ........Q.Q..R.L.RQQ.PSMEP.EAELSL.AGKDQRR.QDLGVSSSCKEP.QEPVPALQKVKPP | |
Retrocopy | QQK>KAEQQHQSQ--RPL*RQQRPSMEPSEAELSLTAGKDQRRTQDLGVSSSCKEPQQEPVPALQKVKPP |
Parental | KTNHKRGRE |
K.N.KR... | |
Retrocopy | KANPKRAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003902 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015916 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002246 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014564 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006511 | 1 retrocopy |
retro_tsyr_1021 ,
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