RetrogeneDB ID: | retro_tsyr_355 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_10274:1614..2199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAR1 | ||
Ensembl ID: | ENSTSYG00000013668 | ||
Aliases: | None | ||
Description: | GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264] |
Percent Identity: | 83.42 % |
Parental protein coverage: | 81.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VGDRMSFRGGGRGSFNRGGGGGGFNRGGGSNNHFR--GGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP |
VG.RMSFRG.G.G.FN.GG.GGGFNRG.GSNN.FR..G.GGGNFRGG.R.GFG.GGG.GGFNKGQDQGPP | |
Retrocopy | VGERMSFRGRGHGGFNGGGEGGGFNRGSGSNNYFRVGGRGGGNFRGGSREGFG*GGGHGGFNKGQDQGPP |
Parental | ERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASS |
ERV.LLGEFLHPCED.IVCKCTTDENKVPYFN.PVYLENKEQIGKVDEIFGQLRDFYF.VKL.ENMKAS. | |
Retrocopy | ERVILLGEFLHPCEDNIVCKCTTDENKVPYFNGPVYLENKEQIGKVDEIFGQLRDFYFLVKLLENMKASP |
Parental | FKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGSRGGGRGGGFRGG |
.KKLQKFYID.YKLLPLQRFLP.PPGEKGPPRGGGRG..GG......RGGGR.GGFRGG | |
Retrocopy | LKKLQKFYIDLYKLLPLQRFLPQPPGEKGPPRGGGRGS*GG----SCRGGGRDGGFRGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004605 | 2 retrocopies | |
Homo sapiens | ENSG00000109534 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008681 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003776 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021225 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008615 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016578 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003901 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004693 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014996 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016364 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013668 | 2 retrocopies |
retro_tsyr_355 , retro_tsyr_613,
|
Tursiops truncatus | ENSTTRG00000016318 | 1 retrocopy |