RetrogeneDB ID: | retro_tsyr_613 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_150051:583..975(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAR1 | ||
Ensembl ID: | ENSTSYG00000013668 | ||
Aliases: | None | ||
Description: | GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264] |
Percent Identity: | 80.45 % |
Parental protein coverage: | 54.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLE |
GG.GNFR..GRGGFG..GG..GF.KGQDQGP.ERVV.L..FL.PCEDD..CKC.TDENKV.YFNAP..LE | |
Retrocopy | GGRGNFRWCGRGGFGGRGGHRGFSKGQDQGPLERVVVL-KFLPPCEDDTACKCITDENKVSYFNAPISLE |
Parental | NKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKF-YIDPYKLLPLQRFLPRPPGEKGP |
NKEQIGKVD.IFGQLRDFYFSVK.SENMKASSFKKLQKF.YI.P.KLLPLQR..PRPPGEKGP | |
Retrocopy | NKEQIGKVDGIFGQLRDFYFSVKFSENMKASSFKKLQKF<YIEP*KLLPLQRLFPRPPGEKGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004605 | 2 retrocopies | |
Homo sapiens | ENSG00000109534 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008681 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003776 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021225 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008615 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016578 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003901 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004693 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014996 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016364 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013668 | 2 retrocopies |
retro_tsyr_355, retro_tsyr_613 ,
|
Tursiops truncatus | ENSTTRG00000016318 | 1 retrocopy |