RetrogeneDB ID: | retro_tsyr_827 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_21087:6820..7445(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM49A | ||
Ensembl ID: | ENSTSYG00000010693 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member A [Source:HGNC Symbol;Acc:25373] |
Percent Identity: | 73.21 % |
Parental protein coverage: | 64.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIHLQEKAWNAVCPLVVRLKRF |
E.AQPTE.E.EI.NQ...VL.D.E.IL.DLQ.Y.GAG.EIR.AIQ.P.D..LQEKAW.AV.PLV..LK.F | |
Retrocopy | EDAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWSAVVPLVGKLKKF |
Parental | YEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTI |
YEFS.RLE.AL..LL..LT..PY.PTQHLEREQALAK.FAEILHFTLR.DELKM.NPAI.NDFSYYRRT. | |
Retrocopy | YEFSQRLEAALSGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRCDELKMTNPAIPNDFSYYRRTL |
Parental | SRNRINNMHLDIE-NEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVC |
SR.RINN.....E...VNNE.A.RMSLFYAEATPMLKTL..AT..FVSENK.LPIENTTD.LSTM.SVC | |
Retrocopy | SRKRINNVPAEGE>HVVNNELAIRMSLFYAEATPMLKTLIDATTQFVSENKNLPIENTTDGLSTMASVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000012839 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013924 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010693 | 4 retrocopies |