RetrogeneDB ID: | retro_ttru_100 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1206:192690..193166(+) | ||
Located in intron of: | ENSTTRG00000012066 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSTTRG00000009431 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 88.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQ |
SKVSRD.LYE.V.EVLH.NQRKR.KFLE.VELQISLKNYD.QKDKRFSGTVRLKS.P.PKFSVCVLGDQQ | |
Retrocopy | SKVSRDSLYEVVQEVLHENQRKRGKFLEAVELQISLKNYDSQKDKRFSGTVRLKSAPHPKFSVCVLGDQQ |
Parental | HCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNE |
HCDEAKAVDIP..D.EALKKL.KNKKLVKKLAKKYDAFLASES.IKQIP.ILGPGLNKAGK.PSLLTHNE | |
Retrocopy | HCDEAKAVDIPPVDTEALKKLSKNKKLVKKLAKKYDAFLASESMIKQIPQILGPGLNKAGKLPSLLTHNE |
Parental | NMVAK-VDEVKSTIKFQMKK |
N.VAK.VDEVKS.IKFQMKK | |
Retrocopy | NTVAK<VDEVKSAIKFQMKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000670 | 13 retrocopies | |
Echinops telfairi | ENSETEG00000013325 | 2 retrocopies | |
Felis catus | ENSFCAG00000012904 | 7 retrocopies | |
Homo sapiens | ENSG00000198755 | 13 retrocopies | |
Gorilla gorilla | ENSGGOG00000028140 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000015907 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008650 | 13 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004065 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009431 | 6 retrocopies |