RetrogeneDB ID:

retro_ttru_1005

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_971:62817..63605(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SNRPN
Ensembl ID:ENSTTRG00000010966
Aliases:None
Description:small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164]


Retrocopy-Parental alignment summary:






>retro_ttru_1005
AGCCTTCCCTTAGGTCTTAAGGATCCCAAAACTTTCCTGTAGGTATTGGACTTGGTGGAACAGCAATCATGACTGTGGGG
AAGAGCAGCAAGATGCTGCAGCACATTGACTATAGGATGAGATGTGTCCTGCAAGATGGCCAGATCTTCACTGGCACCTT
CAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGTGATTGTGATGAGTTCAGGAAGATCAAGCCAAAGAATGCGAAGC
AGGCAGAGCATGAAGAAAAATGGGTTTTGGGTCAGGTGTTGCTGTGTGGGGAGAACTTGGTTTCCATGACTGTGGAGCGA
CCACCCCCCAAAGGTACTGGCATTGCTCGGGTACCACTTGCTGGAGCTACAGGAGGCCCTGGAGTTGGCAGGGCAGCTGG
CAGAGATGGTCCAGCTGGTGTTCAAATTCCCCAGGCTCCTGCTGGGTTAGCAGACCCTGTCCAAGGGTTTGGGGGCCATC
CCAACAGGTAATGATCCCACAGGGAAGAGACACTGTAGCAGCTGCTGCAGTTGCTGCTACTGCCAGCATTGCTGGAGCCT
CAACTCAATATCCACCAGGATGGGGGACTGCCCCCACACCTGTTGGTCGAGCAACACCACCTCTAGGAATTATGGCTCTT
CCACCTGGTATACGATCACCCATGCGCCCACCAATTGGGCTCCCCCCTACTTGAGGGATGCCAATAGGCATGCCCCCTCC
AGGAATGAGACCCCCCTCCAACAGAAATAAGAGGTCCACCTCCCCCAGAAATGCGTCCAGCAAGACCC

ORF - retro_ttru_1005 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.96 %
Parental protein coverage: 96.68 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalSLPLGLKD-PEL-PVDIGFGGAAIMTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCD
SLPLGLKD.P.L.PV.IG.GG.AIMTVGKSSKMLQHIDYRMRC.LQDG.IF.GTFKAFDKHMNLILCDCD
RetrocopySLPLGLKD>PKL>PVGIGLGGTAIMTVGKSSKMLQHIDYRMRCVLQDGQIFTGTFKAFDKHMNLILCDCD
ParentalEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA
EFRKIKPKNAKQ.E.EEK.VLG.VLL.GENLVSMTVE.PPPK.TGIARVPLAGA.GGPGVGRAAGR..PA
RetrocopyEFRKIKPKNAKQAEHEEKWVLGQVLLCGENLVSMTVERPPPKGTGIARVPLAGATGGPGVGRAAGRDGPA
ParentalGVPIPQAPAGLAGPVRGVG-GPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTAPTPVGRATPP
GV.IPQAPAGLA.PV.G.G.GPSQQVM.PQGR.TVAAAAVAATASIAGA.TQYPPG.GTAPTPVGRATPP
RetrocopyGVQIPQAPAGLADPVQGFG<GPSQQVMIPQGRDTVAAAAVAATASIAGASTQYPPGWGTAPTPVGRATPP
ParentalPGIMAPPPGMRPPMGPPIGLPPTRGTPIGMPPPGMR-PPPPGIRGPPPPGMRPPRP
.GIMA.PPG.R.PM.PPIGLPPT.G.PIGMPPPGMR.PPP..IRGPPPP.MRP.RP
RetrocopyLGIMALPPGIRSPMRPPIGLPPT*GMPIGMPPPGMR>PPPTEIRGPPPPEMRPARP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1005 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1005 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 51 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000070343 retrocopies
Bos taurus ENSBTAG000000082511 retrocopy
Canis familiaris ENSCAFG000000101276 retrocopies
Choloepus hoffmanni ENSCHOG000000018462 retrocopies
Cavia porcellus ENSCPOG000000202701 retrocopy
Felis catus ENSFCAG000000222982 retrocopies
Homo sapiens ENSG000001287391 retrocopy
Gorilla gorilla ENSGGOG000000039881 retrocopy
Loxodonta africana ENSLAFG000000094581 retrocopy
Myotis lucifugus ENSMLUG000000233613 retrocopies
Macaca mulatta ENSMMUG000000231391 retrocopy
Mustela putorius furoENSMPUG000000146381 retrocopy
Mus musculus ENSMUSG000000009483 retrocopies
Oryctolagus cuniculus ENSOCUG000000035324 retrocopies
Otolemur garnettii ENSOGAG000000073925 retrocopies
Pongo abelii ENSPPYG000000062691 retrocopy
Pan troglodytes ENSPTRG000000068261 retrocopy
Rattus norvegicus ENSRNOG000000159766 retrocopies
Sus scrofa ENSSSCG000000281242 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000013391 retrocopy
Tursiops truncatus ENSTTRG00000010966 5 retrocopies



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