RetrogeneDB ID:

retro_ttru_1007

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_975:264423..264927(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HPRT1
Ensembl ID:ENSTTRG00000009954
Aliases:None
Description:hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157]


Retrocopy-Parental alignment summary:






>retro_ttru_1007
ATTAGTGGTGATGAACCAGGTTATGACCTAGATTTATTTTGTATACCTAATCATTATGCTGAGGATTTGGAAAAGGTATT
TATTCCTCATGGACTAATTATAGACAGGACCGAATGGCTAGCTCGAGATGTGATGAAGGAGATGGGAGGCCGTCACATCC
TGGCCCTTTGTGTGCTCAAGGAGAGCTATAAATTCTTTGCTGACCTGCTGGATTGCATCAAAGCACTGAACAGAAATAGT
GATAGATCTATACCTATGACGGTAGATTTTATCAGACTGAAAAGCTACTGTCATGACCAGTCAACAGGTGACATAAAAGT
AATTGGTGGAGATGATCTCTCAACTTTAACTGGAAAGAATGTCTTGACTGTTGAAGATATAACTGACACTGGCAAAACAA
CGCAAACCTTGCTTTCCTTGGCCACGCAGCGTGATCCAAAGATGGTCAAGGTTGCAAGTGTGCTGGTGAAAAGGACCCCT
CAAAGTGTTGGATATAGACCAGAC

ORF - retro_ttru_1007 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.29 %
Parental protein coverage: 80.38 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLL
IS.DEPGYDLDLFCIPNHYAEDLEKVFIPHGLI.DRTE.LARDVMKEMGG.HI.ALCVLK..YKFFADLL
RetrocopyISGDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIIDRTEWLARDVMKEMGGRHILALCVLKESYKFFADLL
ParentalDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSL
D.IKALNRNSDRSIPMTVDFIRLKSYC.DQSTGDIKVIGGDDLSTLTGKNVL.VEDI.DTGKT.QTLLSL
RetrocopyDCIKALNRNSDRSIPMTVDFIRLKSYCHDQSTGDIKVIGGDDLSTLTGKNVLTVEDITDTGKTTQTLLSL
ParentalVKQHNPKMVKVASLLVKRTPRSVGYRPD
..Q..PKMVKVAS.LVKRTP.SVGYRPD
RetrocopyATQRDPKMVKVASVLVKRTPQSVGYRPD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1007 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1007 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 51 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000013391 retrocopy
Bos taurus ENSBTAG000000146853 retrocopies
Canis familiaris ENSCAFG000000188701 retrocopy
Cavia porcellus ENSCPOG000000025121 retrocopy
Dasypus novemcinctus ENSDNOG000000084955 retrocopies
Felis catus ENSFCAG000000045752 retrocopies
Homo sapiens ENSG000001657041 retrocopy
Gorilla gorilla ENSGGOG000000080501 retrocopy
Loxodonta africana ENSLAFG000000098922 retrocopies
Microcebus murinus ENSMICG000000065471 retrocopy
Myotis lucifugus ENSMLUG000000035911 retrocopy
Macaca mulatta ENSMMUG000000083031 retrocopy
Mustela putorius furoENSMPUG000000126993 retrocopies
Oryctolagus cuniculus ENSOCUG000000031861 retrocopy
Otolemur garnettii ENSOGAG000000038813 retrocopies
Pongo abelii ENSPPYG000000207332 retrocopies
Pan troglodytes ENSPTRG000000222872 retrocopies
Rattus norvegicus ENSRNOG000000313672 retrocopies
Sarcophilus harrisii ENSSHAG000000079653 retrocopies
Tupaia belangeri ENSTBEG000000008595 retrocopies
Tarsius syrichta ENSTSYG000000095791 retrocopy
Tursiops truncatus ENSTTRG00000009954 9 retrocopies



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