RetrogeneDB ID:

retro_ttru_1011

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_996:173400..173670(-)
Located in intron of:ENSTTRG00000007421
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TIMM9
Ensembl ID:ENSTTRG00000008743
Aliases:None
Description:translocase of inner mitochondrial membrane 9 homolog (yeast) [Source:HGNC Symbol;Acc:11819]


Retrocopy-Parental alignment summary:






>retro_ttru_1011
ATGGCTACACAAATACTGAAATCTGATCAGATAAAACAGTTTAAGAAGTTTCTCAAAACCTACACAGTAAGCCTACGGTA
AACCTGCTTTTTGCAGTGTGAAAGACTTCAGGACAAGAGAAGTAAAGCCTGAAGTGACCTCACCTGCTCAGAACATTGCT
TCCAGAAATGTTTAAAAATGACACGAAGGATATCAATGAGATTTCAGGAATATCCTGTTCAACAGAATGAAGCCCTGATA
GCCAGTGCAGGATGCCTTGGCCAACCACGT

ORF - retro_ttru_1011 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.44 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAQIPESDQIKQFKEFLGTYN-KLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE
MA.QI..SDQIKQFK.FL.TY...L..TCFL.C......R.......TCSEHC.QK.LKMT.RISMRFQE
RetrocopyMATQILKSDQIKQFKKFLKTYTVSLR*TCFLQCERLQDKRSKA*SDLTCSEHCFQKCLKMTRRISMRFQE
ParentalYHIQQNEALAAKAGLLGQPR
Y..QQNEAL.A.AG.LGQPR
RetrocopyYPVQQNEALIASAGCLGQPR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1011 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1011 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 54 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000025891 retrocopy
Bos taurus ENSBTAG000000105032 retrocopies
Cavia porcellus ENSCPOG000000204225 retrocopies
Dasypus novemcinctus ENSDNOG000000148224 retrocopies
Dipodomys ordii ENSDORG000000021852 retrocopies
Equus caballus ENSECAG000000170631 retrocopy
Echinops telfairi ENSETEG000000141238 retrocopies
Felis catus ENSFCAG000000108332 retrocopies
Homo sapiens ENSG000001005752 retrocopies
Loxodonta africana ENSLAFG000000086581 retrocopy
Macropus eugenii ENSMEUG000000036982 retrocopies
Microcebus murinus ENSMICG000000117913 retrocopies
Monodelphis domestica ENSMODG000000078982 retrocopies
Nomascus leucogenys ENSNLEG000000132922 retrocopies
Otolemur garnettii ENSOGAG000000024722 retrocopies
Ochotona princeps ENSOPRG000000029241 retrocopy
Procavia capensis ENSPCAG000000035681 retrocopy
Pongo abelii ENSPPYG000000058592 retrocopies
Pan troglodytes ENSPTRG000000063942 retrocopies
Sorex araneus ENSSARG000000121651 retrocopy
Sus scrofa ENSSSCG000000272702 retrocopies
Tarsius syrichta ENSTSYG000000005025 retrocopies
Tursiops truncatus ENSTTRG00000008743 1 retrocopy
retro_ttru_1011 ,



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