RetrogeneDB ID: | retro_ttru_1015 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_100052:29495..30004(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP4C | ||
Ensembl ID: | ENSTTRG00000005532 | ||
Aliases: | None | ||
Description: | protein phosphatase 4, catalytic subunit [Source:HGNC Symbol;Acc:9319] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 56.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GSVTVWRYCTEIFDYLSLSAIIDGKIFCVHG-GLSPSIQTLDQIRTIDRKQEVPHDG-PMCDLLWSDPED |
GSVT...YC.EIFDYLSL.A..D.KIFCVH..GLS.SI..LD....ID.KQ.VP.DG...CDLLW.DP.D | |
Retrocopy | GSVTM*HYCSEIFDYLSLLAVADHKIFCVHR<GLSTSI*ALD*MQMIDQKQDVPLDG<TVCDLLWFDPQD |
Parental | TTGWGVSPRG-AGYLFGSDVVAQFNAANDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAA |
TTGW..SP.G..GY.F.SDVV.QF....D.DMI.RAH.LV..GY.WHF.ETVLTV...PNYCY.CGN.AA | |
Retrocopy | TTGWCGSPVG<TGYVFRSDVVTQFHSTKDTDMI-RAHHLVT-GYEWHFSETVLTVQLSPNYCYNCGNMAA |
Parental | ILELDEHLQKDFIIFEAAPQ-ETRGIPSKKPVADYFL |
ILELD.HLQ.DF.IFEA.P...T.GIP.KKPVA.YFL | |
Retrocopy | ILELDKHLQEDFSIFEATPE<GTWGIPFKKPVAEYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015223 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017089 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000004266 | 1 retrocopy | |
Equus caballus | ENSECAG00000022179 | 1 retrocopy | |
Felis catus | ENSFCAG00000014171 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000397 | 5 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000008136 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007984 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005532 | 1 retrocopy |
retro_ttru_1015 ,
|
Tursiops truncatus | ENSTTRG00000016859 | 1 retrocopy |