RetrogeneDB ID: | retro_ttru_1026 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_100375:20468..21136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSTTRG00000004934 | ||
Aliases: | None | ||
Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 68.1 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | RPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDYGDIVAQELLYRFKQNRSGRLTIKSLCLSNGGIFPE |
RPH.YSIFE..SI.EALL.HL..QN.RINLLS....DI..QELLYRFKQNRSG.LTI.SLCLSNGGIF.E | |
Retrocopy | RPHDYSIFEKVSIMEALLWHLRFQNSRINLLSNACEDIFTQELLYRFKQNRSGQLTINSLCLSNGGIFLE |
Parental | THRPLLLQKLLKDGGMLSPILTRLMNFFVFSRGLTPVFGPYTRP--SESELWDMWAGIRNNDGNLVIDSL |
.H..LLL..LLKDGGMLSPILT.LMN.FVFS.GL....G.YT.P..SESELWDM.AGIR.ND.NLVI.SL | |
Retrocopy | AHLLLLLHNLLKDGGMLSPILT*LMN-FVFS*GLSSDLGLYT*PSESESELWDM*AGIRHNDRNLVINSL |
Parental | LQYINQRKKFRRRWVGALASVSIPIHFIYGPLDPVNPYPEFLELYRKTLPRSTVS-ILDDHISHYPQLED |
LQYINQ.KKFRR.WV.AL..VSIPIHFI.GPLD.V.PYPEFLELYRK.LP.STVS.ILDDHISHYPQLED | |
Retrocopy | LQYINQMKKFRRHWVRALVIVSIPIHFI*GPLDLVYPYPEFLELYRKMLPQSTVS<ILDDHISHYPQLED |
Parental | PMGFLNAYMGFINSF |
PMGFL..YMGFINSF | |
Retrocopy | PMGFLDTYMGFINSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008404 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |