RetrogeneDB ID:

retro_ttru_1079

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_102235:26493..26901(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM59
Ensembl ID:ENSTTRG00000003198
Aliases:None
Description:transmembrane protein 59 [Source:HGNC Symbol;Acc:1239]


Retrocopy-Parental alignment summary:






>retro_ttru_1079
TGTACAGAAGCATATTCCCGATCTGATGAGCAATATGTTTGCCACCCTGGGTGCCAGAATCAGCCGCCATTTGCTGAATT
GAGACACGAACAACTCATGTCCCTGATGCCAAAACTGCATCTAGTGTTCCCTCTAACTCTGGTAAGGTCATTCTGGAGTG
ACATGATGGACCGTTCACAGAGCTTCTTAACCTCTTCGTGGACTTTTTATCTTCAAGCTGCTGACGGAAAAATAGTTATA
TTCCAGTCTAAGCCAGAAATCCAGTATGCACCACAGTTGGAGCAGGAACCTACAAATTTGAAAGAACCATCGCTAAGCAA
AATGTCCTATCTGCAAATGAGAAGTTCACAAGCACACAGGAACTATCCTGAAGATGGGGAAAGTGATGGCTTTTTAACAT
GTCTCTCC

ORF - retro_ttru_1079 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.24 %
Parental protein coverage: 50.18 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalCTEAYSQSDEQYACHLGCQNQLPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFY
CTEAYS.SDEQY.CH.GCQNQ.PFAELR.EQLMSLMPK.HL.FPLTLVRSFWSDMMD..QSF.TSSWTFY
RetrocopyCTEAYSRSDEQYVCHPGCQNQPPFAELRHEQLMSLMPKLHLVFPLTLVRSFWSDMMDRSQSFLTSSWTFY
ParentalLQADDGKIVIFQSKPEIQYAPQLEQEPTNLKEPSLSKMSYLHMRSSHAHRNYLEDGERDGFLRCLS
LQA.DGKIVIFQSKPEIQYAPQLEQEPTNLKEPSLSKMSYL.MRSS.AHRNY.EDGE.DGFL.CLS
RetrocopyLQAADGKIVIFQSKPEIQYAPQLEQEPTNLKEPSLSKMSYLQMRSSQAHRNYPEDGESDGFLTCLS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1079 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1079 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000095261 retrocopy
Felis catus ENSFCAG000000077371 retrocopy
Tursiops truncatus ENSTTRG00000003198 3 retrocopies
retro_ttru_1079 , retro_ttru_1723, retro_ttru_332,



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