RetrogeneDB ID: | retro_ttru_1115 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_103786:33993..34884(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSTTRG00000004934 | ||
Aliases: | None | ||
Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
Percent Identity: | 86.53 % |
Parental protein coverage: | 90.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MREWWVQVGLLAVPLLAAYLHIPPPQ-LSPALHSWKSSGKF-FTYKGLRIFYQDSVGVVGSPEIVVLLHG |
M.EWWVQVGLLAVPLLAAYL.......LS.ALHSWKSS.KF.FTYKGL.IFYQDSVGVVGSP.IVVLLHG | |
Retrocopy | MKEWWVQVGLLAVPLLAAYLYXXXXXXLSSALHSWKSSRKFIFTYKGLCIFYQDSVGVVGSPDIVVLLHG |
Parental | FPTSSYDWYKXXXXXXXXXXXXXXXXXLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHD |
FPTSSYDWYK.................LGFGFSDKPRPHHY.IFEQASIVEALLRHLGLQNRRI.LLSHD | |
Retrocopy | FPTSSYDWYKICEGLTLRFH*VIALDFLGFGFSDKPRPHHYFIFEQASIVEALLRHLGLQNRRIKLLSHD |
Parental | YGDIVAQELLYRFKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGMLSPILTRLMNFFVFSRGL |
YGDIVAQELLYRFKQN.SG.LTIKSLCLSNGGIFPETH.PLLLQKLLKDG.MLSPILTRLMNFFVFS.GL | |
Retrocopy | YGDIVAQELLYRFKQNQSGQLTIKSLCLSNGGIFPETHHPLLLQKLLKDGDMLSPILTRLMNFFVFSQGL |
Parental | TPVFGPYTRPSESELWDMWAGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVSIPIHFIYGPLDPVN |
TPVFGPY.RPSE.ELWDMW.GIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVSIPIHFIYGPLDPVN | |
Retrocopy | TPVFGPYPRPSETELWDMWSGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVSIPIHFIYGPLDPVN |
Parental | PYPEFLELYRKTLPRST |
PYPEFLELYRKTLPRST | |
Retrocopy | PYPEFLELYRKTLPRST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008404 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |