RetrogeneDB ID: | retro_ttru_1130 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_105090:179393..180613(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSTTRG00000010206 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 85.85 % |
Parental protein coverage: | 96.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
M.CARPLISVYSEKGES.GKNVTLPAVFKAPIRPDIVNFVH.NLRKNNRQPYAVSELAG.QTSAESWGTG | |
Retrocopy | MVCARPLISVYSEKGESAGKNVTLPAVFKAPIRPDIVNFVHINLRKNNRQPYAVSELAGYQTSAESWGTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
R.V.RIPRV.GGGTH.SGQGA.GNMC.GGR.FAPTKTWR.WHRR.NT..KRYAICSALAAS.LPAL.MSK | |
Retrocopy | RPVVRIPRV*GGGTHCSGQGALGNMCLGGRIFAPTKTWRHWHRRLNTMRKRYAICSALAASSLPALAMSK |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI-KKVYASQRMRAGKGKMRNRRRIQRRGPCI |
GHR.EEVPE.PLVVEDKVEGYKKTKEAVLL.K.LKA.NDI.KKVY.SQRMRAGKGK.R.RRRIQRRGPCI | |
Retrocopy | GHRTEEVPEPPLVVEDKVEGYKKTKEAVLLQKNLKARNDI>KKVYGSQRMRAGKGKVRHRRRIQRRGPCI |
Parental | IYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESA-FRKLDELYGTWRKSASLKSNYN |
.YNEDNGIIKAFRNIPG.TLLN.SKLNILKLAPGGHV.RFCIWTESA.FRKL.EL.GTWRK.A.LKSNYN | |
Retrocopy | VYNEDNGIIKAFRNIPGTTLLNISKLNILKLAPGGHVRRFCIWTESA>FRKLEELHGTWRKAAPLKSNYN |
Parental | LPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHK |
LP.HKMLNTDLSRILKSPEIQR.L.APRKKIH.RVLKKNPLKNLRIMLKLNPYAKTM.RNTILRQA.NHK | |
Retrocopy | LPTHKMLNTDLSRILKSPEIQRVLQAPRKKIHCRVLKKNPLKNLRIMLKLNPYAKTMHRNTILRQAKNHK |
Parental | IRMDRVAAALEAKSDEKGIPGKKPVMGKKGKEAICVKKLKKPLVKKAAVTRKPAAKKKPA |
IRMDR.AAALEAKSDEKGIPGK.PV.GKKGK.A.CVKKLKK...KKA.V.......KK.A | |
Retrocopy | IRMDRAAAALEAKSDEKGIPGKEPVVGKKGKKAVCVKKLKKR--KKALVGKMSPVTKKQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |