RetrogeneDB ID:

retro_ttru_1140

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_105443:217962..218209(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:COX19
Ensembl ID:ENSTTRG00000011489
Aliases:None
Description:cytochrome c oxidase assembly homolog 19 (S. cerevisiae) [Source:HGNC Symbol;Acc:28074]


Retrocopy-Parental alignment summary:






>retro_ttru_1140
TTTGAGATCAAGAAATTCCAGCTGCAGCCCTTGGACAAGGGTAGTTTCCTGTGGAATAACTTGGGAGAATGTAAAGTCCT
TAAAGAAAATTTTACAAAATGCTTGGTTAAGCAGAATTTTGAAGTGTTTGTACAGAAATATATTAAAAGGATATTTGGCA
TGGCGAATAGAGAAGTGGTTAATGGCAGAAGAACCATTAGAAAAACTGAGATTTAGAGATCTAATAGATGAAAAATTAGA
AACAGAA

ORF - retro_ttru_1140 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.76 %
Parental protein coverage: 92.22 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFGSKSFQPRPPDKGSFPLDHFGECKSFKE-RFMKCLRDNNFENA-LCRNESKEYLECRMERQLMVPEPLE
F..K.FQ..P.DKGSF.....GECK..KE..F.K.L....F....L.RN..K.YL..R.E..LM..EPLE
RetrocopyFEIKKFQLQPLDKGSFLWNNLGECKVLKE<KFYKMLG*AEF*SV<LYRNILKGYLAWRIEKWLMAEEPLE
ParentalKLGFGDLIDGKSETK
KL.F.DLID.K.ET.
RetrocopyKLRFRDLIDEKLETE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1140 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1140 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000152531 retrocopy
Homo sapiens ENSG000002402301 retrocopy
Gorilla gorilla ENSGGOG000000349071 retrocopy
Macaca mulatta ENSMMUG000000072021 retrocopy
Pan troglodytes ENSPTRG000000416211 retrocopy
Pteropus vampyrus ENSPVAG000000021921 retrocopy
Tursiops truncatus ENSTTRG00000011489 2 retrocopies
retro_ttru_1140 , retro_ttru_1270,



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