RetrogeneDB ID:

retro_ttru_1167

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_106133:38725..39256(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PCNP
Ensembl ID:ENSTTRG00000015008
Aliases:None
Description:PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023]


Retrocopy-Parental alignment summary:






>retro_ttru_1167
ATGGTGGACGGGAAGGCTGGAGAGGAGAAGCCTGAGAAGCTGCAGCAGACTGGAGCCGCCGGAGGACCTGAAGAAGGAGC
AGAAAAACCCGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGGAAATTCCAGTCGCAGCGCTGAGAAGCGATCCG
CTGAAGAAGCTGCAGACCTCCCAACAAAGCCTCCAAAGATCTCCAAGTTTGGATTTGCCACAGGTAGTCAGACAACAAAG
AAAGCCTCAGCCATATCCATCAAACTTGTCTCAAGTAAGCCTAAAGAAACCGTTCCAACTCTTGCTCCAAAAGCCCTTTC
AGCAGTAGCAGCTTTTAAGGAAGATGAGGATAGTGAACCAGAGTAAATGCCTCCAGAAGCAAAGATGAGGATGAAGACTA
CTGGAAGGGATACACCAACATCAGCAGGACCAAATTCCTTCAATAAAGGAAAACATGGGTTTTCTGATAACCAGAAGCTA
TGGAAGTGAAATATAAAATCTCATCTTGGAAATGTTCATGACCAAGACAAT

ORF - retro_ttru_1167 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.58 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADGKAGEEKPEKPQRAGAAGGPEEEAEKPVKTKTVSSSNGGENSSRSAEKRSAEEEAADLPTKPTKISK
M.DGKAGEEKPEK.Q..GAAGGPEE.AEKPVKTKTVSSSNGG.NSSRSAEKRSAEE.AADLPTKP.KISK
RetrocopyMVDGKAGEEKPEKLQQTGAAGGPEEGAEKPVKTKTVSSSNGGGNSSRSAEKRSAEE-AADLPTKPPKISK
ParentalFGFAIGSQMTKKASAISIKLGSSXXXXXXXXXXXKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTP
FGFA.GSQ.TKKASAISIKL.SS...........K.LS..AAF.EDEDSEPE.MPPEAKMRMK..GRDTP
RetrocopyFGFATGSQTTKKASAISIKLVSSKPKETVPTLAPKALSAVAAFKEDEDSEPE*MPPEAKMRMKTTGRDTP
ParentalTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
TSAGPNSFNKGKHGFSDNQKLW..NIKSHLGNVHDQDN
RetrocopyTSAGPNSFNKGKHGFSDNQKLWK*NIKSHLGNVHDQDN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1167 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1167 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 65 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037772 retrocopies
Canis familiaris ENSCAFG000000095933 retrocopies
Choloepus hoffmanni ENSCHOG0000000797211 retrocopies
Callithrix jacchus ENSCJAG000000005086 retrocopies
Dasypus novemcinctus ENSDNOG000000088735 retrocopies
Felis catus ENSFCAG000000290262 retrocopies
Gorilla gorilla ENSGGOG000000254234 retrocopies
Loxodonta africana ENSLAFG000000055182 retrocopies
Myotis lucifugus ENSMLUG000000058785 retrocopies
Macaca mulatta ENSMMUG000000177823 retrocopies
Mustela putorius furoENSMPUG000000116961 retrocopy
Oryctolagus cuniculus ENSOCUG000000111107 retrocopies
Procavia capensis ENSPCAG000000070073 retrocopies
Pteropus vampyrus ENSPVAG000000098862 retrocopies
Sorex araneus ENSSARG000000014332 retrocopies
Sus scrofa ENSSSCG000000119555 retrocopies
Tursiops truncatus ENSTTRG00000015008 1 retrocopy
retro_ttru_1167 ,
Vicugna pacos ENSVPAG000000122391 retrocopy



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