RetrogeneDB ID: | retro_ttru_1181 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_106488:103816..104998(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSTTRG00000007387 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 94.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKN.NEGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNQNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIK-EGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEG |
..K..G..G.GFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEG | |
Retrocopy | ESK<GGAGG-GFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEG |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE |
.GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQS.CMECQGHGERISPKD.CKSCNGRKIVREKKILE | |
Retrocopy | GGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSICMECQGHGERISPKD*CKSCNGRKIVREKKILE |
Parental | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPIST |
VHIDKGMKDGQK.TFHGEGDQEPGLE.GDIIIVLDQKDHAVFTRRG.DLFMCMDIQLVEALCGFQKPIST | |
Retrocopy | VHIDKGMKDGQKLTFHGEGDQEPGLESGDIIIVLDQKDHAVFTRRG-DLFMCMDIQLVEALCGFQKPIST |
Parental | LDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPER |
LDNRTIVITSHPGQIVKHGDI.CVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLS.DKLSLLEKLLPER | |
Retrocopy | LDNRTIVITSHPGQIVKHGDI*CVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSSDKLSLLEKLLPER |
Parental | KEVEETDEMDQVELVDFDPNQERRRHYNGEA-YEDDEHHPRGGVQCQTS |
KEVEETDEMDQVELVDFDPNQERRRHYNGEA...D..HH.RGGVQCQTS | |
Retrocopy | KEVEETDEMDQVELVDFDPNQERRRHYNGEA>EDDE-HHLRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |