RetrogeneDB ID: | retro_ttru_1239 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_108325:18170..18906(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDEL1 | ||
Ensembl ID: | ENSTTRG00000006517 | ||
Aliases: | None | ||
Description: | nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620] |
Percent Identity: | 84.68 % |
Parental protein coverage: | 67.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE |
RLKYEVEAL.E.LEHQ.AQSYKQVSVLE.DLSQTRA.K.QLHKYVRELE.A.DDLE.AKRAT.VSLEDFE | |
Retrocopy | RLKYEVEALTENLEHQHAQSYKQVSVLEEDLSQTRAFKQQLHKYVRELEPAGDDLE*AKRATVVSLEDFE |
Parental | Q-RLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSA |
Q.RLNQAIERNAFL.SELDEKESLLVSVQRL.DEARDLRQ.LAV.ERQQEVTRK.APSSPTLD.EKMDSA | |
Retrocopy | Q<RLNQAIERNAFLKSELDEKESLLVSVQRLMDEARDLRQQLAVGERQQEVTRKLAPSSPTLDWEKMDSA |
Parental | VQASLSLPATPVGKGTENSFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKD |
VQASLSLPATPVG.GTENSFPS.K.IPNGFGT.PLTPSARISA.NIV.D..RKVG.LESKLAA.R.FAK. | |
Retrocopy | VQASLSLPATPVGNGTENSFPSLKSIPNGFGTGPLTPSARISAPNIVWDR*RKVGVLESKLAAGRKFAKA |
Parental | QASRKSY-ISGNVNCGVMNSNGTKFSRSGHTSFFDKGS |
QASRKS..ISGN.NCG.MNS.GTKFS.SGH.SFF.KG. | |
Retrocopy | QASRKSV<ISGNINCGMMNSHGTKFSLSGHSSFFNKGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014341 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012878 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027930 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006517 | 1 retrocopy |
retro_ttru_1239 ,
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