RetrogeneDB ID:

retro_ttru_1287

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_109742:117295..117801(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000014496
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1287
AGATCCAGGCAGTCTCTGGGAGCTGTAACTGCCAGGGATGACCACCACCCTCTCACAGAGGTGTCTTGGTTAGCCTACTA
CTATCACTGTGTGAAACAGTTTCTTGTCTGTGCCATGTGGACATTGTCATCCAGTACAACAACAAGGGAGCTCACTTAGC
AGGTCTGATGTGGTGGATGCTGGCCCCAAAGTTCTGCACATGCGTAACACTAATTCCTTGTGAACAACCATGGGAGGTCA
TGCCCAATCTCTGTTTCTATAGAAATTCTGATGAGATTGAAAAGGAAGAGCAGGTTCCTGCTGAAAATGTCACTACCAAG
GAGGAATTTCAGGGGGAATGGACTGCTTCAGCTCCTGAGATTACTGCTACTCAACCCAGAGGTGCAGACTGGTCTGAAAG
TGTGCAGGTTCCCCAGTGCCAATCCAGCAGTTCACTACTGAAGACTAAGAGTGCTTAGCTTGCTGCTGAAGACTGGTCTG
CAGCTCCCACTGCTCAAGCCACTGAG

ORF - retro_ttru_1287 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.57 %
Parental protein coverage: 57.63 %
Number of stop codons detected: 1
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalREPRLLVVTDPRADHQPLTEASY-VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLARE-VLR
R....L.....R.DH.PLTE.S..V.L....LC.T.S.L..VDI.I..NNKGAH..GLMWWMLA...VL.
RetrocopyRSRQSLGAVTARDDHHPLTEVSW<VSL-LLSLCETVSCLCHVDIVIQYNNKGAHLAGLMWWMLAPK<VLH
ParentalMRGT-ISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ
MR.T.I..E.PWEVMP.L.FYR...EIEKEEQ..AE...TKEEFQGEWTA.APE.TA.QP..ADWSE.VQ
RetrocopyMRNT>IPCEQPWEVMPNLCFYRNSDEIEKEEQVPAENVTTKEEFQGEWTASAPEITATQPRGADWSESVQ
ParentalVPS-VPIQQFPTED-WSAQPATEDWSAAPTAQATE
VP..VPIQQF.TED..SA..A.EDWSAAPTAQATE
RetrocopyVPQ<VPIQQFTTED>KSA*LAAEDWSAAPTAQATE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1287 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1287 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 305 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000041831 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000896213 retrocopies
Bos taurus ENSBTAG0000000975719 retrocopies
Canis familiaris ENSCAFG0000000510127 retrocopies
Callithrix jacchus ENSCJAG0000000967515 retrocopies
Cavia porcellus ENSCPOG000000087157 retrocopies
Dasypus novemcinctus ENSDNOG0000000404827 retrocopies
Equus caballus ENSECAG000000130625 retrocopies
Erinaceus europaeus ENSEEUG000000052922 retrocopies
Echinops telfairi ENSETEG000000181604 retrocopies
Felis catus ENSFCAG0000000273922 retrocopies
Homo sapiens ENSG000001680282 retrocopies
Gorilla gorilla ENSGGOG0000001503811 retrocopies
Loxodonta africana ENSLAFG000000320095 retrocopies
Macaca mulatta ENSMMUG000000079302 retrocopies
Macaca mulatta ENSMMUG0000002296519 retrocopies
Mustela putorius furoENSMPUG0000000246321 retrocopies
Mus musculus ENSMUSG000000325181 retrocopy
Otolemur garnettii ENSOGAG000000288308 retrocopies
Pongo abelii ENSPPYG000000139934 retrocopies
Pan troglodytes ENSPTRG000000228411 retrocopy
Pteropus vampyrus ENSPVAG0000000779419 retrocopies
Rattus norvegicus ENSRNOG0000001864527 retrocopies
Sus scrofa ENSSSCG000000112669 retrocopies
Tarsius syrichta ENSTSYG000000044586 retrocopies
Tursiops truncatus ENSTTRG00000014496 24 retrocopies
Vicugna pacos ENSVPAG000000123074 retrocopies



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