RetrogeneDB ID:

retro_ttru_1308

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_110118:12866..13223(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS19
Ensembl ID:ENSTTRG00000008278
Aliases:None
Description:ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]


Retrocopy-Parental alignment summary:






>retro_ttru_1308
GGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGTCAAGCTGGCCAAGCATAGAGAGCTCTCTCCCTACGATGAGAACTG
GTTCTACATACAAGATGCTTCCACAGCATGGCACCTATACCTCCAGGGTGACGCTGGGGTTGGTTCCATGACCAAGATCT
ATGAGGTGTGTCAGAGACATGGTGTCATGCCCAGCCACTTCAGCAGAGGCTCCAAGAGCGTGGCCCGTCGGGTCCTCCAA
GCCCTGGACGGGCTAAAAATGGTGGAAAAGGACCAAGATGGGGGCTTCAAACTAACACCTCACGGACAGAGAGATCTGGA
TGGAATCTCTGGACAGGTGGCAGCTGCCAACAAGAAG

ORF - retro_ttru_1308 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.71 %
Parental protein coverage: 82.07 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRG
GKLKVPEWVDTVKLAKH.EL.PYDENWFY...ASTA.HLYL.G.AGVGSMTKIY...QR.GVMPSHFSRG
RetrocopyGKLKVPEWVDTVKLAKHRELSPYDENWFYIQDASTAWHLYLQGDAGVGSMTKIYEVCQRHGVMPSHFSRG
ParentalSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAANKK
SKSVARRVLQAL.GLKMVEKDQDGG.KLTP.GQRDLD.I.GQVAAANKK
RetrocopySKSVARRVLQALDGLKMVEKDQDGGFKLTPHGQRDLDGISGQVAAANKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1308 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1308 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 82 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000044564 retrocopies
Canis familiaris ENSCAFG0000002848510 retrocopies
Callithrix jacchus ENSCJAG000000202435 retrocopies
Cavia porcellus ENSCPOG000000251401 retrocopy
Felis catus ENSFCAG000000081253 retrocopies
Gorilla gorilla ENSGGOG000000152794 retrocopies
Myotis lucifugus ENSMLUG000000061435 retrocopies
Pongo abelii ENSPPYG000000100297 retrocopies
Pan troglodytes ENSPTRG000000110376 retrocopies
Pteropus vampyrus ENSPVAG000000089804 retrocopies
Rattus norvegicus ENSRNOG000000481993 retrocopies
Sarcophilus harrisii ENSSHAG000000068311 retrocopy
Sus scrofa ENSSSCG000000030423 retrocopies
Tupaia belangeri ENSTBEG0000000345721 retrocopies
Tursiops truncatus ENSTTRG00000008278 5 retrocopies



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