RetrogeneDB ID:

retro_ttru_1325

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_110491:20883..21357(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL10A
Ensembl ID:ENSTTRG00000009431
Aliases:None
Description:ribosomal protein L10a [Source:HGNC Symbol;Acc:10299]


Retrocopy-Parental alignment summary:






>retro_ttru_1325
AAAGTCTCCCGAGACACCCTCTATGGAAGCAGCACGGGAAGTCCTGCACAGTAACCAGCGCAAGCGCCAGATGTTTTTGG
AGACGGTGGAGCTTCAGATCAGCCTGAAGAGCTATGACCCTCAGAAGGACAAACACTTCTCGGGCACTGTCAGGCTTAAG
TCCACTCCCCTCCCCAAGTTCTCCATATGGGTTCTGGGGGACCAGCAGCATTGTGATGAGGCCAAGGCTGTGGATATCCA
CCACATGGACATAGAGGCTCTGAAGAAACTCAACAAGAATAAGAAACTGGTCAAGAAGCTGGCCAAGAAGTATGATGCCT
TTTTGGCTTCAGAATTTCTGATCAAGCAGATCCCATGAATCTGGGCCCAGATCTGAATAAGGCTGGCAAGTTCCCTTCCT
TGCTGACCCACAATGAGAACATGATGGCCAAAGTTGATGAAGTGAAGTACACGATCAAGTTCCAGATGAAGAAG

ORF - retro_ttru_1325 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.38 %
Parental protein coverage: 99.37 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKVSRDTLY-EAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQ
KVSRDTLY.EA.REVLH.NQRKR..FLETVELQISLK.YDPQKDK.FSGTVRLKSTP.PKFS..VLGDQQ
RetrocopyKVSRDTLY>EAAREVLHSNQRKRQMFLETVELQISLKSYDPQKDKHFSGTVRLKSTPLPKFSIWVLGDQQ
ParentalHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRI-LGPGLNKAGKFPSLLTHN
HCDEAKAVDI.HMDIEALKKLNKNKKLVKKLAKKYDAFLASE.LIKQIP.I.LGP.LNKAGKFPSLLTHN
RetrocopyHCDEAKAVDIHHMDIEALKKLNKNKKLVKKLAKKYDAFLASEFLIKQIP*I<LGPDLNKAGKFPSLLTHN
ParentalENMVAKVDEVKSTIKFQMKK
ENM.AKVDEVK.TIKFQMKK
RetrocopyENMMAKVDEVKYTIKFQMKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1325 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1325 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 86 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000067013 retrocopies
Echinops telfairi ENSETEG000000133252 retrocopies
Felis catus ENSFCAG000000129047 retrocopies
Homo sapiens ENSG0000019875513 retrocopies
Gorilla gorilla ENSGGOG0000002814010 retrocopies
Macropus eugenii ENSMEUG000000057606 retrocopies
Macaca mulatta ENSMMUG000000159076 retrocopies
Monodelphis domestica ENSMODG000000137662 retrocopies
Nomascus leucogenys ENSNLEG0000000865013 retrocopies
Ornithorhynchus anatinus ENSOANG000000145741 retrocopy
Oryctolagus cuniculus ENSOCUG000000040652 retrocopies
Rattus norvegicus ENSRNOG000000005054 retrocopies
Sarcophilus harrisii ENSSHAG000000020471 retrocopy
Tursiops truncatus ENSTTRG00000009431 6 retrocopies



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