RetrogeneDB ID:

retro_ttru_1339

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_110940:12394..14487(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000009748
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1339
GCCCGGAAGCACCCCGGAGAAGGAGGGTTGTGTGGAGCCCACCACAGTGGTGGTGCTCCCTCAGGACTTTAGGACCCTCT
GTGGACCCTGTAATACTTGCATTCTCAGGACTCAGGGACTCGGCTGGGCCTGCTCACAATGGTACCCGCTGCCTCACAGC
GCACTCTAGTCCTAAGTACGCACAGCCCCCAAATCCAGCCCACTGGTCAGATCCAAGCCACGGCCCTCCGAGGGGTCCAC
TCCGTCCCTAGGGATGGAGAGGACCCTGCTCAGAGTGAGGCATCTTCAGAAGAGTCAGGAGTGGGCCAGGAACTCTCAAG
AGATAATGAGGCTGGGTACCAGGAGGATGGGAACCCTGCTTTTCTTTCCATTCCATCTGCTTGTAACTTCCAGGGAATCC
CTGAAGGGCCTTGTTCTGAGGGAGGAGACAGCTCTTCTAGCAACTTTTGCCACCATTGTACCTCTCCGGCTTTGGGGGAA
GATGAAGAGTTGCAAGAGGAATGTGATGAGGAGGAACCTCTTAAGTTTCCCAGTGGTTTTTCATGTGTGCCCAGTGGAAG
GAAACCTGCGCTCCGGAGACAACGGCACCGCGTTCCAGCCAGGGAGGGTACTTGGGAGGGTGGACGCAGAGATCCCAGAT
CCCCTGGTCGACATCGGCTGGGCCGGAACCGGAGTCGGGCAGATAAGCGCAGAGGACTGGGAGTGTGGGTGCGTCAGCTT
GGACAGGCAGGCTTCTGGTGGCTGATCGAACTGCTGGTATTAGTGGGGAGTACGTGGAAACTTGTGGAAACTTGTGGCCG
TCTCATCTATGCACGCAGGCAGCTGAAAGGCAGTGATCTGGACCTTTTTTGGGTCTGGGTGGGAGTCTGGGCAGGGCGGC
TGGGGGTCGGCGCCCAGGTGATGTCCCAGTTTCCGAGCCAAGGGTTTTGCTATGGGGCAGCGCTGTTCACCCGTTTTCTT
AGGCTACTGGGTGCTTTGCTGCTCCCGGCTCTGGCCCTTTTTTGGGGCTGTCTGCAGTTGGGCTGGCGGTTTCTGGTGGG
ACTGAGAGATCGGTTAGGCCGGACGGGTAAAGCCACCTGGCTCTTCTCTTAGCTGGCTTCTCCCACCTGGCAGCGGTGCC
TGATTCTGCTGAGAGACAGCAGGCCGTGGCAGCAGCTGGTAAGAATAGTTCAGTGGGGTTGGCTGGAGTTGCCTTGGGTC
AAGCAGAGGACCAACAGGCAGGGGAATGCGCCTGTAGCTAGTGGTCGCTACTGCCAGCCTGAAGAGGAAGTGGCTCGACT
GTGGACCATGGCTGGGCTTCCTGAGGATGAGCTAAAGCCTTTCCATGTGCTGGGGGTTGAAGCCACAGCATCAGACGTTG
AACTGAAGAAGGCCTATAGGCAGCCGGCAGTGATGGTTCATCCTGACAAAGATAATCATCCCCGGGCTGAGGAGGCCCTC
AAGGTTCTGCGGGCAGCCTGGGACATTGCCAGCGACCCTGAAAGGCGGAAGGAATACGAGATGAAGCGAATGGCAGAGAA
TGAGCTGAGCCGGTCAGTGAATGAGTTTCTGTCCAAGCTGCAGGATGACCTCAAAGAAGCAATGAATACTGTGGTGTGCA
GCCGATGCCAGGGAAAGCATAGGAGGTTTGCAACGGACCAGGAACCTGAGAGCGCCAGACACTGCGCTGAGTGTAACGGG
CTGCATCCTGCTGAGGAAGGAGACTTTGGGGCAGAGTCGAGCATGATGGGCCTCAAGATCACCTACTTTGCGCTGATGGA
TAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACCCGCCGGGTCCCCATCA
CATCTCATTTGGTTCACGGATGCCAGGCACCAGTGGGTGGCAGAGAGCTACCCCAGGTGCCCCTCCTGCTGACCTTCAGG
ATTTCTTGAGCCAGATCTTTCAAGTACCCCCAGGCCAGATGTCCAAAGGGAACTTCTTTGCAGCTCCTCAGCTGGGCCCT
GGGACCACTGCAGCCTCCAAGCCCAACAGCACAGTACCCAAGGGAGAAGCCAAACCGAAGCGGCGGAAGAAAGTGAGGAC
GCCCTTCCAGCGT

ORF - retro_ttru_1339 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.55 %
Parental protein coverage: 99.86 %
Number of stop codons detected: 2
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalAQKHPGEGGLCGAHHSGGA-SLRTLGPSVDPEILSFSGLRDSAGPAPNGTRCLTEHSSPKYTQPPNPAHW
A.KHPGEGGLCGAHHSGGA.SLRTLGPSVDP.IL.FSGLRDSAGPA.NGTRCLT.HSSPKY.QPPNPAHW
RetrocopyARKHPGEGGLCGAHHSGGA<SLRTLGPSVDPVILAFSGLRDSAGPAHNGTRCLTAHSSPKYAQPPNPAHW
ParentalSDPSHGPPRGP-GPPRDGEDPDQSEASSEESGVDQELSRENEAGYQEDGNPSFLSIPPACNCQGTPGIPE
SDPSHGPPRGP...PRDGEDP.QSEASSEESGV.QELSR.NEAGYQEDGNP.FLSIP.ACN.Q...GIPE
RetrocopySDPSHGPPRGP>SVPRDGEDPAQSEASSEESGVGQELSRDNEAGYQEDGNPAFLSIPSACNFQ---GIPE
ParentalGPYSEGGDSSSSNFCHHCTSPALGEDEELEEEYDEEEPLKFPSDFSRVPSGKKPAPRRQRHRVPAKEDTR
GP.SEGGDSSSSNFCHHCTSPALGEDEEL.EE.DEEEPLKFPS.FS.VPSG.KPA.RRQRHRVPA.E.T.
RetrocopyGPCSEGGDSSSSNFCHHCTSPALGEDEELQEECDEEEPLKFPSGFSCVPSGRKPALRRQRHRVPAREGTW
ParentalEGGRRDPRSPGRHRLGRKRSQADKRRGLGLWGAEELCQLGQAGFWWLIELLVLV-GEYVETCGH-LIYAC
EGGRRDPRSPGRHRLGR.RS.ADKRRGLG.W....L.Q.G...FWWLIELLVLV.GEYVETCG..L....
RetrocopyEGGRRDPRSPGRHRLGRNRSRADKRRGLGVW-VRQLGQAG---FWWLIELLVLV<GEYVETCGN<LVAVS
ParentalRQLKGSDLDLFWVWVG-VWAG----RLGGRAQVMFQFLSQGFCYGAGLFTRFLRLLGALLLLALALLLGC
....GS.....W...G.VW.G....RLG..AQVM.QF.SQGFCYGA.LFTRFLRLLGALLL.ALAL..GC
RetrocopySMHAGS*KAVIWTFFG<VWVGVWAGRLGVGAQVMSQFPSQGFCYGAALFTRFLRLLGALLLPALALFWGC
ParentalLQLGWRFLVGLSDRLGWRGKATWLFSWLASPTWQRCLILLRESRPWQQLVRIVQWGWLELPWVKQRTSRQ
LQLGWRFLVGL.DRLG..GKATWLFS.LASPTWQRCLILLR.SRPWQQLVRIVQWGWLELPWVKQRT.RQ
RetrocopyLQLGWRFLVGLRDRLGRTGKATWLFS*LASPTWQRCLILLRDSRPWQQLVRIVQWGWLELPWVKQRTNRQ
ParentalGNAPVASGRYCQPEEEVARLLTMAGVPEDELNPFHVLGVEATASDVELKKAYRQLAVMVHPDKNNHPRAE
GNAPVASGRYCQPEEEVARL.TMAG.PEDEL.PFHVLGVEATASDVELKKAYRQ.AVMVHPDK.NHPRAE
RetrocopyGNAPVASGRYCQPEEEVARLWTMAGLPEDELKPFHVLGVEATASDVELKKAYRQPAVMVHPDKDNHPRAE
ParentalEAFKVLRAAWDIVSNPERRKEYEMKRMAENELSRSVNEFLSKLQDDLKEAMNTMMCSRCQGKHRRFEMDR
EA.KVLRAAWDI.S.PERRKEYEMKRMAENELSRSVNEFLSKLQDDLKEAMNT..CSRCQGKHRRF..D.
RetrocopyEALKVLRAAWDIASDPERRKEYEMKRMAENELSRSVNEFLSKLQDDLKEAMNTVVCSRCQGKHRRFATDQ
ParentalEPKSARYCAECNRLHPAEEGDFWAESSMLGLKITYFALMDGKVYDITEWAGCQRVGISPDTHRV-PYHIS
EP.SAR.CAECN.LHPAEEGDF.AESSM.GLKITYFALMD.KVYDITEWAGCQ.VGISPDT.RV.P.HIS
RetrocopyEPESARHCAECNGLHPAEEGDFGAESSMMGLKITYFALMDRKVYDITEWAGCQHVGISPDTRRV<PHHIS
ParentalFGSRMPGTSGRQRATPDAPPADLQDFLSRIFQVPPGQMSNGNFFAAPQPGPGATAASKPNSTVPKGEAKP
FGSRMPGTSG.QRATP.APPADLQDFLS.IFQVPPGQMS.GNFFAAPQ.GPG.TAASKPNSTVPKGEAKP
RetrocopyFGSRMPGTSGWQRATPGAPPADLQDFLSQIFQVPPGQMSKGNFFAAPQLGPGTTAASKPNSTVPKGEAKP
ParentalKRRKKVRRPFQR
KRRKKVR.PFQR
RetrocopyKRRKKVRTPFQR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1339 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1339 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000009748 1 retrocopy
retro_ttru_1339 ,


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