RetrogeneDB ID:

retro_ttru_1361

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_111366:2842..3203(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AP3S2
Ensembl ID:ENSTTRG00000015554
Aliases:None
Description:adaptor-related protein complex 3, sigma 2 subunit [Source:HGNC Symbol;Acc:571]


Retrocopy-Parental alignment summary:






>retro_ttru_1361
CTTGTCTGCTTCTACCAGCGTTTCCCAGAAGAAATTCAACAGCAGGTTATTCGAGAGATCTTCCATCTAGCTCTCAAACG
GGATGACAATGTCTGTAACTTCTTGGGGGGTGGAAGTTTGATTGGTGGGTCTGACTACAAACTGATTTATCGGTGTTTTG
CTACCCTCTACTTTGTATTTTGGGGGGATTCATCAGAGAGTGAACTTGGGATCTTAGACCTCATCCAGGATTTTGTGGAG
ACTCTGGACAAGTGTTTCAAAAATGTTTGTGAATTGGATTTGATCTTCCATATGGATAAGTGCACTACATTCTTCAGAGG
TGGTGATGGGTAGGATGGCGTTGGAAATAAACATGAATGAA

ORF - retro_ttru_1361 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.18 %
Parental protein coverage: 62.69 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLVRFYQRFPEEIQQQIIRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELG
LV.FYQRFPEEIQQQ.IRE.FHL.LKRDDN.CNFL.GGSLIGGSDYKLIYR..ATLYFVF..DSSESELG
RetrocopyLVCFYQRFPEEIQQQVIREIFHLALKRDDNVCNFLGGGSLIGGSDYKLIYRCFATLYFVFWGDSSESELG
ParentalILDLIQVFVETLDKCFENVCELDLIFHMDK-VHYILQ-EVVMGGMVLETNMNE
ILDLIQ.FVETLDKCF.NVCELDLIFHMDK.VHYILQ.EVVMG.M.LE.NMNE
RetrocopyILDLIQDFVETLDKCFKNVCELDLIFHMDK<VHYILQ<EVVMGRMALEINMNE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1361 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1361 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000014071 retrocopy
Choloepus hoffmanni ENSCHOG000000033594 retrocopies
Dipodomys ordii ENSDORG000000042471 retrocopy
Equus caballus ENSECAG000000240441 retrocopy
Felis catus ENSFCAG000000281221 retrocopy
Macropus eugenii ENSMEUG000000034211 retrocopy
Monodelphis domestica ENSMODG000000195221 retrocopy
Nomascus leucogenys ENSNLEG000000117802 retrocopies
Otolemur garnettii ENSOGAG000000309821 retrocopy
Rattus norvegicus ENSRNOG000000431411 retrocopy
Sus scrofa ENSSSCG000000301747 retrocopies
Tursiops truncatus ENSTTRG000000008133 retrocopies
Tursiops truncatus ENSTTRG00000015554 2 retrocopies
retro_ttru_1233, retro_ttru_1361 ,
Vicugna pacos ENSVPAG000000086681 retrocopy



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