RetrogeneDB ID: | retro_ttru_1364 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_111400:93927..94293(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSTTRG00000008653 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 67.21 % |
Parental protein coverage: | 96.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IAKAQAARPGGDTIFGKIIRKEIPAKIIYEDDQCLAFHDVSPQAPTHFLVIPKKHISQISAAEDDDESLL |
..KAQ........IFGK...KEIP..II.E.D..LA..D.S.QAPTHFLVIPKKHIS.IS.AE.DD...L | |
Retrocopy | VLKAQVVQSDDSMIFGKTTCKEIPGEIIFEGDCYLALRDISSQAPTHFLVIPKKHIS*ISVAEGDDRNFL |
Parental | GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG |
G.LMIVGKKCAADLGLKK.YR.VV.EGSD.GQ.VYH.H.H..GG.QMNWPPG | |
Retrocopy | GYLMIVGKKCAADLGLKKDYRTVVKEGSDVGQPVYHFHAHIPGGQQMNWPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017774 | 4 retrocopies | |
Bos taurus | ENSBTAG00000010959 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032152 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014398 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010127 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011967 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005368 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001091 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000028727 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000011639 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006607 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000000622 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005834 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014264 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027920 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000008653 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000011932 | 1 retrocopy |