RetrogeneDB ID:

retro_ttru_1383

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_111802:468..1164(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZCCHC17
Ensembl ID:ENSTTRG00000014870
Aliases:None
Description:zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246]


Retrocopy-Parental alignment summary:






>retro_ttru_1383
ATGAATTCAGGAAGACCCGAGACCATGGAGAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCTATGGTGAC
AGACTGTGGAGGCAAGTCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAACTCACATGTCATCCTGTCGCGT
GGATAAGCCCTCTGAGATAGTAGATGTCGGAGAGAAGGTGTGGGTGAAGCTTATCGGACGAGAGATGAAAAGGGAAAGGA
TAAAAGTATCCCTCTCCGTGAAAGCTGTCAACCAAGGGACTGGGAAGGACCTTGACGCCAACAACGTTATCATTGAGCAA
TAAGAGAGGCAGAGGCAGTCCTTCCAGGATTACACTGGGCAGAAGATCACCCTCGAGGCTGTCCTGAACACTACCTGCAA
GGAGTGTGGCTGTAAAGGCCACTTCGCAAAGCATTGTTTCATGCAACCAGGTGGGAGCAAGTACTCTCTGATACCTAATG
AGAGAGAGGAGAAGGAAGAGGCAAAATCAGCAGAGTTTGAAAAGCCTGACCCCACGAGAAATTCTTCTAGAAAAAGAAAG
AAGGAAAAGGAGAAAAAGAAACAGAGAGACAGGAAGTCATCTGACTCTGACAGCTCGGACTCTGAGAGTGACACACAAGA
GGGCAAGGCACACGTCAAAAGACAGCAAGGCAGCAAAGAAGAAAAAGAAGAAGCAG

ORF - retro_ttru_1383 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.34 %
Parental protein coverage: 96.27 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMNSGRPETMENLPALYTIFQGEVAMVTDYGAF-IKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWV
MNSGRPETMENLPALYTIFQGEVAMVTD.G....KIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG.KVWV
RetrocopyMNSGRPETMENLPALYTIFQGEVAMVTDCGGK<VKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGEKVWV
ParentalKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCK
KLIGREMK..RIKVSLS.K.VNQGTGKDLD.NNVIIEQ.ER.R.SFQDYTGQKITLEAVLNTTCK.CGCK
RetrocopyKLIGREMKRERIKVSLSVKAVNQGTGKDLDANNVIIEQ*ERQRQSFQDYTGQKITLEAVLNTTCKECGCK
ParentalGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKAAEFEKPDPTRNSSRKRKKEKKKKKHRDRKSSDSDSSDSE
GHFAK.CFMQPGG.KYSLIP.E.EEKEEAK.AEFEKPDPTRNSS............RDRKSSDSDSSDSE
RetrocopyGHFAKHCFMQPGGSKYSLIPNEREEKEEAKSAEFEKPDPTRNSSXXXXXXXXXXXQRDRKSSDSDSSDSE
ParentalSDTGKRARHTSK-DSKAAKKKKKK
SDT.....H.......A.KKKKK.
RetrocopySDTQEGKAHVKR>SKAAKKKKKKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1383 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1383 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000177101 retrocopy
Bos taurus ENSBTAG000000168182 retrocopies
Canis familiaris ENSCAFG000000111312 retrocopies
Callithrix jacchus ENSCJAG000000062591 retrocopy
Dipodomys ordii ENSDORG000000041281 retrocopy
Echinops telfairi ENSETEG000000074211 retrocopy
Loxodonta africana ENSLAFG000000153641 retrocopy
Monodelphis domestica ENSMODG000000170821 retrocopy
Mus musculus ENSMUSG000000287721 retrocopy
Otolemur garnettii ENSOGAG000000137491 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000038251 retrocopy
Tursiops truncatus ENSTTRG00000014870 2 retrocopies
retro_ttru_1383 , retro_ttru_1613,



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