RetrogeneDB ID:

retro_ttru_1407

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_112559:330432..330807(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TSACC
Ensembl ID:ENSTTRG00000001408
Aliases:None
Description:TSSK6 activating co-chaperone [Source:HGNC Symbol;Acc:30636]


Retrocopy-Parental alignment summary:






>retro_ttru_1407
TTGGAGCAGCGTTCTAGTCATCCTACTAACAGAAGAGCCAAAGAGGAAGGTAATGCTGTGCCTCTTTGTCGAGCCAAACC
CTCCCCCAGCTTTATTAAACTTCAAGCAAGTTCCCCACCAGCCACTTTCCTGAAAATCCTGGCAACAAAGCTGCCCTCAG
GAATTGAGCACAAGCCCAAGGAATGCCTAGGACTCCTAGAATGTATGTGTGCCAATCTCCAGCTTCAGACCCAGCTTGCC
CAACAACAGATGGCTATTTTGGAAGATCTACAAGCATCCATGACACAACTGGCTCCTGGGAGAGAAAGCAAGAACTCTTC
TCTCCCAGCCTTATCTCGCAATCTGTTGTTAAATCTCCTGCCCCAATTCAGTAAA

ORF - retro_ttru_1407 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.46 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMEQRSSHPTNRRVPAKEEGNAVPLCRAKPTPSFINLQASSPPATCLKIPATKLSSA-DHKPKECLGLLEC
.EQRSSHPTNRR..AKEEGNAVPLCRAKP.PSFI.LQASSPPAT.LKI.ATKL.S...HKPKECLGLLEC
RetrocopyLEQRSSHPTNRR--AKEEGNAVPLCRAKPSPSFIKLQASSPPATFLKILATKLPSGIEHKPKECLGLLEC
ParentalMYASLQLETQLAQQRMAIFENLQASMTQLAPGRESQNSSLPTLSCNLLLNHLPQFSK
M.A.LQL.TQLAQQ.MAI.E.LQASMTQLAPGRES.NSSLP.LS.NLLLN.LPQFSK
RetrocopyMCANLQLQTQLAQQQMAILEDLQASMTQLAPGRESKNSSLPALSRNLLLNLLPQFSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1407 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1407 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Mustela putorius furoENSMPUG000000043911 retrocopy
Tursiops truncatus ENSTTRG00000001408 1 retrocopy
retro_ttru_1407 ,



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