RetrogeneDB ID:

retro_ttru_1417

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_112777:223063..223243(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C14orf2
Ensembl ID:ENSTTRG00000006404
Aliases:None
Description:chromosome 14 open reading frame 2 [Source:HGNC Symbol;Acc:1188]


Retrocopy-Parental alignment summary:






>retro_ttru_1417
GTGCTTCAAAGCCTTATTAAGAATGTTTGGATCCCCGTGAAGCCTTACTATATCCAAGTTTACCAGGAGATTAGAATAGG
AATGGGGTTGATGGGCTTCATCGTTTATGAGATCAGGAGTGCTGATAAAAGAAGTAAAGCCATGAAAGCTTCCAGGCTTG
TGTCTGCTCGTGGTCATCAC

ORF - retro_ttru_1417 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.33 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLQSLIKNVWVPMKPYYTQVYQEIWAGMGLMAFIVYKIRSADKRSKALKASSPEPARGHH
.LQSLIKNVW.P.KPYY.QVYQEI..GMGLM.FIVY.IRSADKRSKA.KAS....ARGHH
RetrocopyVLQSLIKNVWIPVKPYYIQVYQEIRIGMGLMGFIVYEIRSADKRSKAMKASRLVSARGHH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1417 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1417 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000268864 retrocopies
Homo sapiens ENSG000001564111 retrocopy
Mustela putorius furoENSMPUG000000022979 retrocopies
Nomascus leucogenys ENSNLEG000000162481 retrocopy
Pan troglodytes ENSPTRG000000067641 retrocopy
Pteropus vampyrus ENSPVAG000000115483 retrocopies
Rattus norvegicus ENSRNOG000000431442 retrocopies
Sus scrofa ENSSSCG000000025505 retrocopies
Tupaia belangeri ENSTBEG000000089963 retrocopies
Tursiops truncatus ENSTTRG00000006404 5 retrocopies
Vicugna pacos ENSVPAG000000012497 retrocopies



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