RetrogeneDB ID:

retro_ttru_142

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1357:246639..246834(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFC1
Ensembl ID:ENSTTRG00000001107
Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa [Source:HGNC Symbol;Acc:7705]


Retrocopy-Parental alignment summary:






>retro_ttru_142
TCCAGGCTGCTGGCCCCAGCCAGGATCCTGAATGGCTTTTTAGCACGCTCTAAGTTCTACATTTGGGAGCTACCAGATGA
CAAACCTGACTGGCTGAAAGCCGGACTGGCCTTGGGTACCTCCATCTTCTTGTGGATCTATCTCATCAAACATAATGAAG
ATGTTTTAGAATATAAAAGAAGAAATGGGTTGGAA

ORF - retro_ttru_142 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.76 %
Parental protein coverage: 86.84 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSKLLAPARLPSGSSARSKFYIREPPQGSPDWLKVGLTLGTSVFLWIYLIKQHNEDVLEYERRNGLE
S.LLAPAR...G..ARSKFYI.E.P...PDWLK.GL.LGTS.FLWIYLIK.HNEDVLEY.RRNGLE
RetrocopySRLLAPARILNGFLARSKFYIWELPDDKPDWLKAGLALGTSIFLWIYLIK-HNEDVLEYKRRNGLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_142 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_142 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000110402 retrocopies
Bos taurus ENSBTAG000000395822 retrocopies
Dasypus novemcinctus ENSDNOG000000156391 retrocopy
Echinops telfairi ENSETEG0000000480011 retrocopies
Felis catus ENSFCAG000000085481 retrocopy
Loxodonta africana ENSLAFG000000104595 retrocopies
Microcebus murinus ENSMICG000000068361 retrocopy
Myotis lucifugus ENSMLUG000000090822 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000235903 retrocopies
Tursiops truncatus ENSTTRG00000001107 2 retrocopies
retro_ttru_142 , retro_ttru_586,
Vicugna pacos ENSVPAG000000077031 retrocopy



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