RetrogeneDB ID: | retro_ttru_1427 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_113009:126868..127863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTTRG00000017098 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDHA1 | ||
Ensembl ID: | ENSTTRG00000000660 | ||
Aliases: | None | ||
Description: | pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806] |
Percent Identity: | 78.38 % |
Parental protein coverage: | 85.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHG-FTFTR |
EDGLKYYRMMQ...RMELKADQL.KQK.IRGFCHLCDGQEACCVGLEAG.NPTDH.I....AHG.F..TR | |
Retrocopy | EDGLKYYRMMQNICRMELKADQL*KQKFIRGFCHLCDGQEACCVGLEAGLNPTDHVIASCQAHG<FMCTR |
Parental | GLSVRAILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEICLTLYGDG |
GLSV..ILAELTGRRGGC..G.GGSMHMYA.NFYGGNG.VGAQ..LGAGIALACK..G....C.TL.G.G | |
Retrocopy | GLSVPSILAELTGRRGGCVEGEGGSMHMYANNFYGGNGTVGAQGLLGAGIALACKCKGNNKVC*TLHGNG |
Parental | AANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR |
AANQGQI.EAYNM.A.W.LPCIFICENNRYGMG.SVERAAA.TDYYKRG.FIPGL.VDGMD.LCVREAT. | |
Retrocopy | AANQGQISEAYNMTAVWNLPCIFICENNRYGMGISVERAAANTDYYKRGSFIPGLKVDGMDVLCVREATE |
Parental | FAAAYCRAGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE |
.AA.YCR.GKGPILMEL.TY.YHGHSMS.PG.SYRTREE.Q..RSKS.PIMLLKD.MVN..LAS.EELKE | |
Retrocopy | VAADYCRSGKGPILMELLTYHYHGHSMSHPGISYRTREEVQNLRSKSHPIMLLKDKMVNNKLASIEELKE |
Parental | IDVDVRKEIEDAAQFATADPEPPLEELGYHIYCSDPPFEVRGANQWIKFKSIS |
IDV.VRKEI..AAQFA..DPEPPLE.L..HIY...PPFE.R.ANQWI.FKS.S | |
Retrocopy | IDVEVRKEIDAAAQFAITDPEPPLEKLSHHIYSTNPPFEIRDANQWIRFKSVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |